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PIMCO NEW YORK MUNICIPAL INCOME FUND II

Regulatory Filings Jan 29, 2014

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N-CSRS 1 d663406dncsrs.htm PIMCO NEW YORK INCOME FUND II PIMCO New York Income Fund II

Table of Contents

UNITED STATES

SECURITIES AND EXCHANGE COMMISSION

Washington, D.C. 20549

FORM N-CSR

CERTIFIED SHAREHOLDER REPORT OF REGISTERED

MANAGEMENT INVESTMENT COMPANIES

Investment Company Act file number 811-21078

PIMCO New York Municipal Income Fund II

(Exact name of registrant as specified in charter)

1633 Broadway, New York, New York 10019

(Address of principal executive offices) (Zip code)

Lawrence G. Altadonna —1633 Broadway, New York, New York 10019

(Name and address of agent for service)

Registrant’s telephone number, including area code: 212-739-3371

Date of fiscal year end: May 31, 2014

Date of reporting period: November 30, 2013

Table of Contents

Item 1. REPORT TO SHAREHOLDERS

PIMCO Municipal Income Fund II

PIMCO California Municipal Income Fund II

PIMCO New York Municipal Income Fund II

Semi-Annual Report

November 30, 2013

Table of Contents

Table of Contents

2–3 Letter from the Chairman of the Board & President
4 Fund Insights
5–7 Performance & Statistics
8–26 Schedules of Investments
27 Statements of Assets and Liabilities
28 Statements of Operations
30 Statements of Changes in Net Assets
32–43 Notes to Financial Statements
44–46 Financial Highlights
47 Annual Shareholder Meeting Results/Proxy Voting Policies & Procedures
48–52 Matters Relating to the Trustees’ Consideration of the Investment Management & Portfolio Management Agreements

Table of Contents

Letter from the Chairman of the Board and President

Hans W. Kertess

Chairman

Brain S. Shlissel

President & Chief Executive Officer

Dear Shareholder:

Municipal bonds generated weak results during the fiscal six-month reporting period ended November 30, 2013. Yields moved higher as the US economy continued to expand and the Federal Reserve (the “Fed”) indicated that it may begin tapering its asset purchase program. Investor demand for municipal securities also slumped as the reporting period progressed due to concerns regarding the fallout from Detroit’s bankruptcy filing.

For the fiscal six-month period ended November 30, 2013:

n PIMCO Municipal Income Fund II returned -6.96% on net asset value (“NAV”) and -10.22% on market price.

n PIMCO California Municipal Income Fund II returned -9.18% on NAV and -9.22% on market price.

n PIMCO New York Municipal Income Fund II returned -8.02% on NAV and -9.93% on market price.

Six Months in Review

During the reporting period, the US experienced choppy, but continued growth. Gross domestic product (“GDP”), the value of goods and services produced in the country, the broadest measure of economic activity and the principal indicator of economic performance, grew at an annual pace of 1.1% during the first quarter and 2.5% during the second quarter of 2013.

The US Commerce Department reported that third quarter 2013 GDP growth registered 4.1%. Supporting the economy were signs of improvement in the housing market and although unemployment remained elevated, the unemployment rate declined during the six-month reporting period.

The Fed maintained an accommodative monetary policy throughout the reporting period. However, with unemployment falling and signs of improving economic activity, the Fed announced its intention to begin tapering its monthly $85 billion asset purchase program in June 2013. This triggered sharply rising yields and declining bond prices. However, the Fed surprised many investors at its meetings in September and October 2013 by choosing not to begin tapering. This caused yields to drop from the reporting period peak in early September. All told, US Treasury interest rates moved sharply higher during the six-month fiscal period, with the yield on the benchmark 10-year Treasury bond rising from 2.16% to 2.75%.

2 Semi-Annual Report | November 30, 2013

Table of Contents

Outlook

The US was highly resilient during the reporting period and appeared to overcome the headwinds associated with higher taxes, the sequestration and rising interest rates. Market volatility was at times elevated during the period. This was partly triggered by concerns regarding the Fed’s plans to taper its asset purchase program, mixed global growth and the 16 day partial US government shutdown that began on October 1, 2013.

Receive this report electronically and eliminate paper mailings.

To enroll, visit;

us.allianzgi.com/edelivery.

In December 2013, after the reporting period concluded, the Fed announced the tapering of its asset purchase program. We expect the central bank to take a measured approach with the withdrawal of its purchases in 2014. While ongoing Fed tapering could lead to periods of volatility, the Fed made it clear that it does not intend to raise short term rates for an extended period, indicating that “highly accommodative stance of monetary policy will remain appropriate for a considerable time after the asset purchase program ends and the economic recovery strengthens.” Consequently, concerns of higher mortgage rates impacting the housing market, geopolitical issues, and continued dysfunction in Washington DC are likely to contribute to market volatility.

For specific information on the Funds and their performance, please review the following pages. If you have any questions regarding the information provided, we encourage you to contact your financial advisor or call the Funds’ shareholder servicing agent at (800) 254-5197. In addition, a wide range of information and resources is available on our website, us.allianzgi.com/closedendfunds.

Together with Allianz Global Investors Fund Management LLC, the Funds’ investment manager, and Pacific Investment Management Company LLC (“PIMCO”), the Funds’ sub-adviser, we thank you for investing with us.

We remain dedicated to serving your investment needs.

Sincerely,

Hans W. Kertess Brian S. Shlissel
Chairman of the Board of Trustees President & Chief Executive Officer

November 30, 2013 | Semi-Annual Report 3

Table of Contents

Fund Insights

PIMCO Municipal Income Fund II

PIMCO California Municipal Income Fund II

PIMCO New York Municipal Income Fund II

November 30, 2013 (unaudited)

For the six-months ended November 30, 2013, PIMCO Municipal Income Fund II (“Municipal II”) returned -6.96% on net asset value (“NAV”) and -10.22% on market price.

For the six-months ended November 30, 2013, PIMCO California Municipal Income Fund II (“California Municipal II”) returned -9.18% on NAV and -9.22% on market price.

For the six-months ended November 30, 2013, PIMCO New York Municipal Income Fund II (“New York Municipal II”) returned -8.02% on NAV and -9.93% on market price.

The overall municipal bond market, as measured by the Barclays Municipal Bond Index (the “Index”) experienced periods of elevated volatility during the six-month reporting period ended November 30, 2013. The Index produced a negative return during each of the first three months of the period. This was triggered by sharply rising yields given the Federal Reserve’s (the “Fed”) announcement of a possible shift in monetary policy. Investor demand for municipal bonds also weakened due to several high profile credit events, including Detroit’s filing for bankruptcy in July 2013. The Index then rallied sharply over the next two months of the period as the Fed surprised the market and chose not be begin tapering its asset purchase program during its meeting on September 18. However, the Index modestly declined during the last month of the period as interest rates again moved higher. All told, the Index fell 2.45% during the six-month reporting period. In comparison, the overall taxable fixed income market, as measured by the Barclays US Aggregate Bond Index, declined 0.56%.

Each Fund’s longer duration than the Index detracted from performance, as municipal yields moved higher during the six-month reporting period. Each of the Funds were negatively impacted by their overweighting to the tobacco sector as this sector underperformed the Index. Municipal II and California Municipal II were negatively impacted by their overweighting to the Industrial Revenue sector given its underperformance versus the Index. California Municipal II’s and New York Municipal II’s preference for Revenue municipal bonds over General Obligation municipal bonds was detrimental as the former underperformed the latter during the reporting period. New York Municipal II’s overweighting to the Lease-Backed and Industrial Revenue sectors was detrimental to performance as both of these sectors underperformed the Index.

Each of the Funds benefited from an underweighting to Puerto Rico-related securities as a result of their underperformance versus the Index. Municipal Income II’s tactical exposure to the Special Tax sector and its underweighting to the Transportation sector were beneficial for its performance. California Municipal II’s tactical exposure to the Electric Utility sector and its underweighting to the Lease-Backed sector were positive for performance. New York Municipal II’s underweightings to the Special Tax and Electric Utility sectors contributed to performance as these sectors underperformed the Index.

4 Semi-Annual Report | November 30, 2013

Table of Contents

Performance & Statistics

PIMCO Municipal Income Fund II

November 30, 2013 (unaudited)

Total Return (1) : — Six Month -10.22% -6.96%
1 Year -17.88% -8.74%
5 Year 13.75% 13.85%
10 Year 4.22% 3.99%
Commencement of Operations (6/28/02) to 11/30/13 3.82% 4.57%

Market Price/NAV Performance:

Commencement of Operations (6/28/02) to 11/30/13

Market Price/NAV:
Market Price $10.56
NAV $10.92
Discount to NAV -3.30%
Market Price Yield (2) 7.39%
Leverage Ratio (3) 38.16%

Moody’s Rating

(as a % of total investments)

November 30, 2013 | Semi-Annual Report 5

Table of Contents

Performance & Statistics

PIMCO California Municipal Income Fund II

November 30, 2013 (unaudited)

Total Return (1) : — Six Month -9.22% -9.18%
1 Year -9.79% -10.03%
5 Year 16.89% 11.09%
10 Year 3.47% 1.99%
Commencement of Operations (6/28/02) to 11/30/13 3.07% 2.46%

Market Price/NAV Performance:

Commencement of Operations (6/28/02) to 11/30/13

Market Price/NAV:
Market Price $9.15
NAV $7.73
Premium to NAV 18.37%
Market Price Yield (2) 7.29%
Leverage Ratio (3) 45.10%

Moody’s Rating

(as a % of total investments)

6 Semi-Annual Report | November 30, 2013

Table of Contents

Performance & Statistics

PIMCO New York Municipal Income Fund II

November 30, 2013 (unaudited)

Total Return (1) : — Six Month -9.93% -8.02%
1 Year -18.74% -11.28%
5 Year 13.05% 10.49%
10 Year 3.97% 3.36%
Commencement of Operations (6/28/02) to 11/30/13 3.57% 3.75%

Market Price/NAV Performance:

Commencement of Operations (6/28/02) to 11/30/13

Market Price/NAV:
Market Price $10.41
NAV $10.01
Premium to NAV 4.00%
Market Price Yield (2) 7.64%
Leverage Ratio (3) 44.29%

Moody’s Rating

(as a % of total investments)

(1) Past performance is no guarantee of future results. Total return is calculated by determining the percentage change in NAV or market price (as applicable) in the specified period. The calculation assumes that all dividends and distributions, if any, have been reinvested. Total return does not reflect broker commissions or sales charges in connection with the purchase or sale of Fund shares. Total return for a period of less than one year is not annualized. Total return for a period of more than one year represents the average annual total return.

Performance at market price will differ from results at NAV. Although market price returns typically reflect investment results over time, during shorter periods returns at market price can also be influenced by factors such as changing views about the Funds, market conditions, supply and demand for each Fund’s shares, or changes in each Fund’s dividends.

An investment in the Funds involves risk, including the loss of principal. Total return, market price, market price yield and NAV will fluctuate with changes in market conditions. This data is provided for information purposes only and is not intended for trading purposes. Closed-end funds, unlike open-end funds, are not continuously offered. There is a one time public offering and once issued, shares of closed-end funds are traded in the open market through a stock exchange. NAV is equal to total assets attributable to common shareholders less total liabilities divided by the number of common shares outstanding. Holdings are subject to change daily.

(2) Market Price Yield is determined by dividing the annualized current monthly dividend per common share (comprised of net investment income) by the market price per common share at November 30, 2013.

(3) Represents Floating Rate Notes issued in tender option bond transactions and Preferred Shares outstanding (collectively “Leverage”), as a percentage of total managed assets. Total managed assets refer to total assets (including assets attributable to Leverage) minus liabilities (other than liabilities representing Leverage).

November 30, 2013 | Semi-Annual Report 7

Table of Contents

Schedule of Investments

PIMCO Municipal Income Fund II

November 30, 2013 (unaudited)

Principal Amount (000s)
Municipal Bonds & Notes – 96.4%
Alabama – 2.6%
$1,000 Birmingham-Baptist Medical Centers Special Care Facs. Financing Auth. Rev., Baptist Health Systems, Inc., 5.00%, 11/15/30, Ser. A $947,420
Jefferson Cnty. Sewer Rev. (e),
20,000 zero coupon, 10/1/50 (j) 9,404,400
16,000 6.50%, 10/1/53, Ser. D 14,868,640
2,000 State Docks Department Rev., 6.00%, 10/1/40 2,205,340
27,425,800
Arizona – 7.9%
Health Facs. Auth. Rev., Banner Health,
3,500 5.00%, 1/1/35, Ser. A 3,535,805
2,860 5.50%, 1/1/38, Ser. D 2,990,187
Pima Cnty. Industrial Dev. Auth. Rev.,
29,700 5.00%, 9/1/39 29,821,473
1,500 Tucson Electric Power Co., 5.25%, 10/1/40, Ser. A 1,482,855
Pinal Cnty. Electric Dist. No. 3 Rev.,
1,750 5.25%, 7/1/36 1,789,410
3,700 5.25%, 7/1/41 3,750,579
10,000 Salt River Project Agricultural Improvement & Power Dist. Rev., 5.00%, 1/1/39, Ser. A (i) 10,412,900
Salt Verde Financial Corp. Rev.,
9,000 5.00%, 12/1/32 8,848,350
22,400 5.00%, 12/1/37 21,759,808
84,391,367
California – 13.8%
Bay Area Toll Auth. Rev.,
5,000 5.25%, 4/1/48, Ser. S-4 5,106,850
6,000 San Francisco Bay Area, 5.00%, 10/1/29 6,362,280
1,430 San Francisco Bay Area, 5.00%, 4/1/34, Ser. F-1 1,489,660
1,565 Foothill-Eastern Transportation Corridor Agcy. Rev., 5.875%, 1/15/26 (IBC-NPFGC) 1,571,056
16,035 Golden State Tobacco Securitization Corp. Rev., 5.75%, 6/1/47, Ser. A-1 12,266,775
2,000 Hayward Unified School Dist., GO, 5.00%, 8/1/33 2,035,200
Health Facs. Financing Auth. Rev.,
1,500 Scripps Health, 5.00%, 11/15/36, Ser. A 1,522,290
6,300 Sutter Health, 5.00%, 11/15/42, Ser. A (IBC-NPFGC) 6,280,722
3,000 Sutter Health, 6.00%, 8/15/42, Ser. B 3,293,820
1,500 Indian Wells Redev. Agcy., Tax Allocation, Whitewater Project, 4.75%, 9/1/34, Ser. A (AMBAC) 1,290,210
2,000 Los Angeles Community College Dist., GO, 5.00%, 8/1/32, Ser. A (FGIC-NPFGC) 2,101,380
4,000 Los Angeles Department of Water & Power Rev., 5.00%, 7/1/39, Ser. A-1 (AMBAC) 4,086,440
5,000 Los Angeles Unified School Dist., GO, 5.00%, 7/1/30, Ser. E (AMBAC) 5,190,200
1,750 M-S-R Energy Auth. Rev., 6.50%, 11/1/39, Ser. B 2,077,302
2,000 Montebello Unified School Dist., GO, 5.00%, 8/1/33 (AGM) 2,088,460
2,985 Municipal Finance Auth. Rev., Azusa Pacific Univ. Project, 7.75%, 4/1/31, Ser. B 3,261,053
3,000 Newport Beach Rev., Hoag Memorial Hospital Presbyterian, 5.875%, 12/1/30 (Pre-refunded @ $100, 12/1/21) (c) 3,796,380
500 Peralta Community College Dist., GO, 5.00%, 8/1/39, Ser. C 502,410
2,000 San Diego Cnty. Water Auth., CP, 5.00%, 5/1/38, Ser. 2008-A (AGM) 2,090,720

8 Semi-Annual Report | November 30, 2013

Table of Contents

Schedule of Investments

PIMCO Municipal Income Fund II

November 30, 2013 (unaudited) (continued)

Principal Amount (000s)
California (continued)
$3,300 San Marcos Unified School Dist., GO, 5.00%, 8/1/38, Ser. A $3,373,491
2,000 Santa Clara Cnty. Financing Auth. Rev., El Camino Hospital, 5.75%, 2/1/41, Ser. A (AMBAC) 2,106,760
State, GO,
2,925 5.00%, 11/1/32 3,104,741
1,590 5.00%, 6/1/37 1,629,352
5,200 5.125%, 8/1/36 5,379,036
2,500 5.25%, 3/1/38 2,590,050
5,945 5.25%, 11/1/40 6,185,475
5,750 5.50%, 3/1/40 6,205,400
9,500 6.00%, 4/1/38 10,752,575
Statewide Communities Dev. Auth. Rev.,
2,510 California Baptist Univ., 5.75%, 11/1/17, Ser. B (a)(b)(d)(k) (acquisition cost-$2,510,000; purchased 6/22/07) 2,603,874
710 California Baptist Univ., 6.50%, 11/1/21 773,020
1,000 Cottage Health, 5.00%, 11/1/40 997,020
4,890 Methodist Hospital Project, 6.625%, 8/1/29 (FHA) 5,654,405
17,415 Methodist Hospital Project, 6.75%, 2/1/38 (FHA) 19,657,704
5,690 Sutter Health, 6.00%, 8/15/42, Ser. A 6,247,279
4,725 Torrance Rev., Torrance Memorial Medical Center, 5.00%, 9/1/40, Ser. A 4,759,587
148,432,977
Colorado – 1.7%
5,800 Aurora Rev., Children’s Hospital Assoc., 5.00%, 12/1/40 5,715,436
1,000 Denver Health & Hospital Auth. Rev., 5.625%, 12/1/40 1,001,420
Health Facs. Auth. Rev., Ser. A,
1,000 American Baptist Homes, 5.90%, 8/1/37 914,430
2,500 Catholic Health Initiatives, 5.00%, 2/1/41 2,445,325
500 Evangelical Lutheran, 6.125%, 6/1/38 (Pre-refunded @ $100, 6/1/14) (c) 514,550
6,045 Sisters of Charity of Leavenworth Health System, 5.00%, 1/1/40 6,126,910
1,430 Public Auth. for Colorado Energy Rev., 6.50%, 11/15/38 1,683,639
18,401,710
Connecticut – 0.2%
1,250 Harbor Point Infrastructure Improvement Dist., Tax Allocation, 7.875%, 4/1/39, Ser. A 1,356,663
1,000 State Health & Educational Fac. Auth. Rev., Hartford Healthcare, 5.00%, 7/1/41, Ser. A 989,620
2,346,283
Florida – 5.0%
1,000 Brevard Cnty. Health Facs. Auth. Rev., Health First, Inc. Project, 7.00%, 4/1/39 1,082,210
Broward Cnty. Airport System Rev.,
12,100 5.00%, 10/1/42, Ser. Q-1 12,116,214
600 5.375%, 10/1/29, Ser. O 648,282
8,500 Broward Cnty. Water & Sewer Utility Rev., 5.25%, 10/1/34, Ser. A (i) 9,131,295
1,000 Clearwater Water & Sewer Rev., 5.25%, 12/1/39, Ser. A 1,039,540
340 Dev. Finance Corp. Rev., Renaissance Charter School, 6.50%, 6/15/21, Ser. A 346,463
3,000 Highlands Cnty. Health Facs. Auth. Rev., Adventist Health System, 5.625%, 11/15/37, Ser. B 3,217,950
3,000 Leesburg Hospital Rev., Leesburg Regional Medical Center Project, 5.50%, 7/1/32 3,000,210
10,000 Orlando-Orange Cnty. Expressway Auth. Rev., 5.00%, 7/1/40, Ser. A 10,077,600

November 30, 2013 | Semi-Annual Report 9

Table of Contents

Schedule of Investments

PIMCO Municipal Income Fund II

November 30, 2013 (unaudited) (continued)

Principal Amount (000s)
Florida (continued)
$500 Sarasota Cnty. Health Facs. Auth. Rev., 5.75%, 7/1/37 $445,690
7,900 State Board of Education, GO, 5.00%, 6/1/38, Ser. D (i) 8,218,844
5,000 Sumter Landing Community Dev. Dist. Rev., 4.75%, 10/1/35, Ser. A (NPFGC) 4,664,800
53,989,098
Georgia – 0.4%
1,500 Atlanta Airport Rev., 5.00%, 1/1/40, Ser. A 1,521,900
2,775 Medical Center Hospital Auth. Rev., Spring Harbor Green Island Project, 5.25%, 7/1/37 2,481,960
4,003,860
Illinois – 6.3%
2,500 Chicago, GO, 5.00%, 1/1/34, Ser. C 2,297,125
2,444 Special Assessment, Lake Shore East, 6.625%, 12/1/22 2,471,446
5,439 Special Assessment, Lake Shore East, 6.75%, 12/1/32 5,498,992
1,250 Chicago Motor Fuel Tax Rev., 5.00%, 1/1/38, Ser. A (AGC) 1,196,000
Finance Auth. Rev.,
2,500 Christian Homes, Inc., 5.75%, 5/15/31, Ser. A 2,546,750
250 Leafs Hockey Club Project, 6.00%, 3/1/37, Ser. A (b)(f) 85,000
700 OSF Healthcare System, 7.125%, 11/15/37, Ser. A 794,017
2,000 Provena Health, 6.00%, 5/1/28, Ser. A 2,109,520
5,000 Univ. of Chicago, 5.50%, 7/1/37, Ser. B (i) 5,390,700
37,000 Sports Facs. Auth. Rev., 5.50%, 6/15/30 (AMBAC) 38,427,090
Village of Hillside, Tax Allocation, Mannheim Redev. Project,
3,880 6.55%, 1/1/20 4,065,348
2,900 7.00%, 1/1/28 2,901,189
67,783,177
Indiana – 0.4%
1,500 Finance Auth. Rev., Duke Energy Indiana, Inc., 6.00%, 8/1/39, Ser. B 1,603,470
990 Vigo Cnty. Hospital Auth. Rev., Union Hospital, Inc., 5.80%, 9/1/47 (a)(b)(d)(k) (acquisition cost-$960,082; purchased 9/7/07) 926,234
1,900 7.50%, 9/1/22 2,244,432
4,774,136
Iowa – 1.8%
Finance Auth. Rev.,
250 Deerfield Retirement Community, Inc., 5.50%, 11/15/27, Ser. A (f) 125,403
1,075 Deerfield Retirement Community, Inc., 5.50%, 11/15/37, Ser. A (f) 539,070
4,500 Edgewater LLC Project, 6.75%, 11/15/42 4,574,295
5,000 Fertilizer Company Project, 5.25%, 12/1/25 4,492,650
5,000 Fertilizer Company Project, 5.50%, 12/1/22 4,712,200
5,350 Tobacco Settlement Auth. Rev., 5.60%, 6/1/34, Ser. B 4,470,085
18,913,703
Kansas – 0.1%
500 Dev. Finance Auth. Rev., Adventist Health, 5.75%, 11/15/38 537,675
850 Manhattan Rev., Meadowlark Hills Retirement, 5.00%, 5/15/36, Ser. A (b) 739,279
1,276,954
Kentucky – 0.1%
1,000 Economic Dev. Finance Auth. Rev., Owensboro Medical Healthcare Systems, 6.375%, 6/1/40, Ser. A 1,048,890

10 Semi-Annual Report | November 30, 2013

Table of Contents

Schedule of Investments

PIMCO Municipal Income Fund II

November 30, 2013 (unaudited) (continued)

Principal Amount (000s)
Louisiana – 0.7%
Local Gov’t Environmental Facs. & Community Dev. Auth Rev.,
$450 Westlake Chemical Corp., 6.50%, 11/1/35, Ser. A-2 $480,069
750 Woman’s Hospital Foundation, 5.875%, 10/1/40, Ser. A 781,770
1,000 Woman’s Hospital Foundation, 6.00%, 10/1/44, Ser. A 1,046,550
Public Facs. Auth. Rev., Ochsner Clinic Foundation Project,
3,300 5.50%, 5/15/47, Ser. B 3,269,970
2,000 6.50%, 5/15/37 2,134,620
7,712,979
Maryland – 0.7%
Health & Higher Educational Facs. Auth. Rev.,
1,400 Charlestown Community, 6.25%, 1/1/41 1,497,986
2,380 Medstar Health, 5.00%, 8/15/41 2,320,595
4,050 Washington Cnty. Hospital, 6.00%, 1/1/43 4,090,581
7,909,162
Massachusetts – 0.9%
Dev. Finance Agcy. Rev.,
4,610 Adventcare Project, 6.75%, 10/15/37, Ser. A 4,704,966
570 Adventcare Project, 7.625%, 10/15/37 608,236
1,000 Foxborough Regional Charter School, 7.00%, 7/1/42, Ser. A 1,083,550
2,900 State College Building Auth. Rev., 5.50%, 5/1/39, Ser. A 3,156,592
9,553,344
Michigan – 0.5%
1,000 Detroit, GO, 5.25%, 11/1/35 959,740
800 Public Educational Facs. Auth. Rev., Bradford Academy, 6.50%, 9/1/37 (a)(b)(d)(k) (acquisition cost-$800,000; purchased 9/21/07) 456,000
3,000 Royal Oak Hospital Finance Auth. Rev., William Beaumont Hospital, 8.25%, 9/1/39 3,588,390
5,004,130
Minnesota – 0.6%
1,500 Minneapolis Rev., Providence Project, 5.75%, 10/1/37, Ser. A 1,395,285
North Oaks Rev., Presbyterian Homes North Oaks,
2,640 6.00%, 10/1/33 2,686,543
1,530 6.125%, 10/1/39 1,560,325
400 St. Louis Park Rev., Nicollett Health Services, 5.75%, 7/1/39 420,772
6,062,925
Mississippi – 0.0%
40 Dev. Bank Special Obligation Rev., Capital Projects and Equipment Acquisition, 5.00%, 7/1/24, Ser. A-2 (AMBAC) 38,380
Missouri – 1.0%
645 Lee’s Summit, Tax Allocation, Summit Fair Project, 5.625%, 10/1/23 659,964
10,000 State Health & Educational Facs. Auth. Rev., CoxHealth, 5.00%, 11/15/44, Ser. A 10,015,300
10,675,264
Nevada – 0.9%
10,000 Clark Cnty., GO, 4.75%, 11/1/35 (FGIC-NPFGC) (i) 10,126,700
New Hampshire – 0.2%
2,000 Business Finance Auth. Rev., Elliot Hospital, 6.125%, 10/1/39, Ser. A 2,064,420
New Jersey – 3.9%
950 Burlington Cnty. Bridge Commission Rev., The Evergreens Project, 5.625%, 1/1/38 829,730

November 30, 2013 | Semi-Annual Report 11

Table of Contents

Schedule of Investments

PIMCO Municipal Income Fund II

November 30, 2013 (unaudited) (continued)

Principal Amount (000s)
New Jersey (continued)
$4,000 Economic Dev. Auth., Special Assessment, Kapkowski Road Landfill Project, 5.75%, 10/1/21 $4,268,760
Economic Dev. Auth. Rev.,
525 Arbor Glen, 6.00%, 5/15/28, Ser. A 453,721
2,000 MSU Student Housing Project, 5.875%, 6/1/42 2,065,780
Health Care Facs. Financing Auth. Rev.,
1,500 AHS Hospital Corp., 6.00%, 7/1/37 1,667,415
4,000 Robert Wood Johnson Univ. Hospital, 5.50%, 7/1/43 4,172,200
1,500 St. Peters Univ. Hospital, 5.75%, 7/1/37 1,390,650
2,000 State Turnpike Auth. Rev., 5.25%, 1/1/40, Ser. E 2,095,020
Tobacco Settlement Financing Corp. Rev., Ser. 1-A,
3,300 4.75%, 6/1/34 2,404,149
31,305 5.00%, 6/1/41 22,585,931
41,933,356
New Mexico – 0.2%
2,000 Farmington Pollution Control Rev., 5.90%, 6/1/40, Ser. D 2,099,860
New York – 12.6%
33,500 Hudson Yards Infrastructure Corp. Rev., 5.25%, 2/15/47, Ser. A 34,529,120
Liberty Dev. Corp. Rev.,
1,000 Bank of America Tower at One Bryant Park Project, 5.125%, 1/15/44 1,024,980
2,500 Bank of America Tower at One Bryant Park Project, 5.625%, 7/15/47 2,647,375
1,250 Bank of America Tower at One Bryant Park Project, 6.375%, 7/15/49 1,342,900
10,000 Goldman Sachs Headquarters, 5.25%, 10/1/35 (i) 10,506,600
1,505 Goldman Sachs Headquarters, 5.25%, 10/1/35 1,581,243
3,880 Metropolitan Transportation Auth. Rev., 5.00%, 11/15/36, Ser. D 3,958,919
1,100 Nassau Cnty. Industrial Dev. Agcy. Rev., Amsterdam at Harborside, 6.70%, 1/1/43, Ser. A 599,335
New York City Water & Sewer System Rev.,
2,830 5.00%, 6/15/37, Ser. D (i) 2,926,050
4,000 Second Generation Resolutions, 4.75%, 6/15/35, Ser. DD (i) 4,053,080
2,000 Second Generation Resolutions, 5.00%, 6/15/39, Ser. GG-1 2,064,260
New York Liberty Dev. Corp. Rev.,
10,000 1 World Trade Center Project, 5.00%, 12/15/41 10,245,600
54,000 4 World Trade Center Project, 5.75%, 11/15/51 57,612,060
1,750 State Dormitory Auth. Rev., The New School, 5.50%, 7/1/40 1,827,333
134,918,855
North Carolina – 0.1%
Medical Care Commission Rev.,
550 Salemtowne, 5.10%, 10/1/30 508,387
1,000 Village at Brookwood, 5.25%, 1/1/32 1,033,780
1,542,167
North Dakota – 0.4%
3,710 Stark Cnty. Healthcare Rev., Benedictine Living Communities, 6.75%, 1/1/33 3,860,886
Ohio – 4.8%
33,740 Buckeye Tobacco Settlement Financing Auth. Rev., 6.50%, 6/1/47, Ser. A-2 28,206,640
4,000 Hamilton Cnty. Healthcare Rev., Christ Hospital Project, 5.00%, 6/1/42 3,779,720
3,900 Hamilton Cnty. Sales Tax Rev., 5.00%, 12/1/30, Ser. A 4,019,106

12 Semi-Annual Report | November 30, 2013

Table of Contents

Schedule of Investments

PIMCO Municipal Income Fund II

November 30, 2013 (unaudited) (continued)

Principal Amount (000s)
Ohio (continued)
$1,000 Higher Educational Fac. Commission Rev., Univ. Hospital Health Systems, 6.75%, 1/15/39, Ser. 2009-A (Pre-refunded @ $100, 1/15/15) (c) $1,072,250
1,000 Montgomery Cnty. Rev., Miami Valley Hospital, 6.25%, 11/15/39, Ser. A (Pre-refunded @ $100, 11/15/14) (c) 1,057,220
3,000 State Rev., Cleveland Clinic Health System, 5.50%, 1/1/39, Ser. B 3,193,410
10,000 State Turnpike Commission Rev., 5.00%, 2/15/48, Ser. A-1 9,999,300
51,327,646
Oregon – 0.2%
1,000 Clackamas Cnty. Hospital Fac. Auth. Rev., Legacy Health System, 5.50%, 7/15/35, Ser. A 1,037,520
1,155 State Department of Administrative Services, CP, 5.25%, 5/1/39, Ser. A 1,202,309
2,239,829
Pennsylvania – 5.3%
9,000 Berks Cnty. Municipal Auth. Rev., Reading Hospital Medical Center, 5.00%, 11/1/44, Ser. A 8,860,320
Cumberland Cnty. Municipal Auth. Rev., Messiah Village Project, Ser. A,
750 5.625%, 7/1/28 756,420
670 6.00%, 7/1/35 679,306
3,250 Harrisburg Auth. Rev., Harrisburg Univ. of Science, 6.00%, 9/1/36, Ser. B (f) 1,628,120
Higher Educational Facs. Auth. Rev.,
850 Edinboro Univ. Foundation, 6.00%, 7/1/43 827,033
400 Thomas Jefferson Univ., 5.00%, 3/1/40 404,028
500 Luzerne Cnty. Industrial Dev. Auth. Rev., Pennsylvania American Water Co., 5.50%, 12/1/39 524,930
8,500 Montgomery Cnty. Industrial Dev. Auth. Rev., New Regional Medical Center, 5.375%, 8/1/38 (FHA) 8,905,875
17,000 Philadelphia, GO, 5.25%, 12/15/32, Ser. A (AGM) 17,452,540
6,000 Philadelphia Hospitals & Higher Education Facs. Auth. Rev., Temple Univ. Health System, 5.625%, 7/1/42, Ser. A 4,873,320
500 Philadelphia Water & Wastewater Rev., 5.25%, 1/1/36, Ser. A 519,355
10,000 Turnpike Commission Rev., 5.00%, 12/1/43, Ser. C 10,078,200
1,000 Westmoreland Cnty. Industrial Dev. Auth. Rev., Excela Health Project, 5.125%, 7/1/30 1,003,000
56,512,447
Rhode Island – 5.1%
56,200 Tobacco Settlement Financing Corp. Rev., 6.25%, 6/1/42, Ser. 2002-A 54,671,360
South Carolina – 1.5%
1,000 Greenwood Cnty. Rev., Self Regional Healthcare, 5.375%, 10/1/39 1,027,310
State Public Service Auth. Rev.,
10,000 5.50%, 12/1/53, Ser. E 10,231,400
5,000 Sanatee Cooper, 5.125%, 12/1/43, Ser. B 5,068,300
16,327,010
Tennessee – 1.2%
1,750 Claiborne Cnty. Industrial Dev. Board Rev., Lincoln Memorial Univ. Project, 6.625%, 10/1/39 1,839,705
1,000 Johnson City Health & Educational Facs. Board Rev., Mountain States Health Alliance, 6.00%, 7/1/38, Ser. A 1,062,880
500 Sullivan Cnty. Health Educational & Housing Facs. Board Rev., Wellmont Health Systems Project, 5.25%, 9/1/36, Ser. C 474,525

November 30, 2013 | Semi-Annual Report 13

Table of Contents

Schedule of Investments

PIMCO Municipal Income Fund II

November 30, 2013 (unaudited) (continued)

Principal Amount (000s)
Tennessee (continued)
Tennessee Energy Acquisition Corp. Rev., Ser. C,
$3,000 5.00%, 2/1/23 $3,169,050
6,000 5.00%, 2/1/27 6,045,720
12,591,880
Texas – 13.3%
130 Aubrey Independent School Dist., GO, 5.50%, 2/15/33 (GTD-PSF) 131,678
6,500 Brazos Cnty. Health Facs. Dev. Corp. Rev., 5.375%, 1/1/32 6,500,325
2,500 Dallas Rev., Dallas Civic Center, 5.25%, 8/15/38 (AGC) 2,600,775
21,000 Grand Parkway Transportation Corp. Rev., 5.00%, 4/1/53, Ser. B 20,435,100
Harris Cnty. Cultural Education Facs. Finance Corp. Rev., Texas Children’s Hospital Project,
3,750 5.25%, 10/1/29 4,099,125
12,700 5.50%, 10/1/39 13,517,499
700 HFDC of Central Texas, Inc. Rev., Village at Gleannloch Farms, 5.50%, 2/15/37, Ser. A 611,373
5,000 Municipal Gas Acquisition & Supply Corp. III Rev., 5.00%, 12/15/26 5,076,150
North Harris Cnty. Regional Water Auth. Rev.,
10,300 5.25%, 12/15/33 10,852,492
10,300 5.50%, 12/15/38 10,891,838
North Texas Tollway Auth. Rev.,
5,750 5.00%, 1/1/38 5,811,238
1,300 5.50%, 9/1/41, Ser. A 1,403,493
5,000 5.625%, 1/1/33, Ser. B 5,254,600
1,200 5.75%, 1/1/33, Ser. F 1,262,076
1,920 Private Activity Bond Surface Transportation Corp. Rev., 7.00%, 6/30/40 2,099,059
250 San Juan Higher Education Finance Auth. Rev., 6.70%, 8/15/40, Ser. A 271,250
State, Mobility Fund, GO (i),
10,025 4.75%, 4/1/35, Ser. A 10,231,114
17,500 4.75%, 4/1/36 18,082,575
1,000 State Public Finance Auth. Charter School Finance Corp. Rev., 5.875%, 12/1/36, Ser. A 1,021,520
3,000 Tarrant Cnty. Cultural Education Facs. Finance Corp. Rev., Baylor Health Care Systems Project, 6.25%, 11/15/29 3,350,070
15,300 Texas Municipal Gas Acquisition & Supply Corp. I Rev., 6.25%, 12/15/26, Ser. D 17,607,240
1,000 Wise Cnty. Rev., Parker Cnty. Junior College Dist., 8.00%, 8/15/34 1,106,790
142,217,380
Virginia – 0.2%
1,000 Fairfax Cnty. Industrial Dev. Auth. Rev., Inova Health Systems, 5.50%, 5/15/35, Ser. A 1,082,400
James City Cnty. Economic Dev. Auth. Rev., United Methodist Home, Ser. A,
412 2.00%, 10/1/48(f) 10,900
1,273 6.00%, 6/1/43 1,043,921
2,137,221
Washington – 1.5%
Health Care Facs. Auth. Rev.,
1,300 Multicare Health Systems, 6.00%, 8/15/39, Ser. B (AGC) 1,384,175
1,000 Seattle Cancer Care Alliance, 7.375%, 3/1/38 1,182,450
13,000 Virginia Mason Medical Center, 6.125%, 8/15/37, Ser. A 13,271,570
15,838,195
West Virginia – 0.2%
2,000 Hospital Finance Auth. Rev., Highland Hospital, 9.125%, 10/1/41 2,382,840

14 Semi-Annual Report | November 30, 2013

Table of Contents

Schedule of Investments

PIMCO Municipal Income Fund II

November 30, 2013 (unaudited) (continued)

Principal Amount (000s)
Wisconsin – 0.1%
$1,000 Health & Educational Facs. Auth. Rev., Prohealth Care, Inc., 6.625%, 2/15/39 $1,094,030
Total Municipal Bonds & Notes (cost-$1,005,083,357) 1,033,630,221
Variable Rate Notes – 1.4%
California – 0.5%
5,000 Health Facs. Financing Auth. Rev., 9.529%, 11/15/36, Ser. 3193 (a)(b)(d)(g)(h)(k) (acquisition cost-$4,860,300; purchased 6/7/10) 5,166,150
Florida – 0.2%
1,830 Highlands Cnty. Health Facs. Auth. Rev., Adventist Health System, 5.00%, 11/15/31, Ser. C (h) 1,858,420
Texas – 0.5%
5,365 State, GO, 9.048%, 4/1/37, Ser. 3197 (a)(b)(d)(g)(h)(k) (acquisition cost-$5,289,890; purchased 6/23/10) 5,616,940
West Virginia – 0.2%
2,000 Economic Dev. Auth. Rev., Appalachian Power, 5.375%, 12/1/38, Ser. A (h) 2,055,660
Total Variable Rate Notes (cost-$13,983,591) 14,697,170
Corporate Bonds & Notes – 0.1%
Commercial Services – 0.1%
900 ADT Corp., 4.125%, 6/15/23 (cost-$801,163) 797,993
Short-Term Investments – 2.1%
U.S. Treasury Obligations – 1.7%
2,300 U.S. Treasury Bills, 0.08%-0.12%, 8/21/14-11/13/14 (l) 2,297,544
U.S. Treasury Notes,
200 0.125%, 7/31/14 199,992
1,800 0.25%, 5/31/14 1,801,195
100 0.25%, 6/30/14 100,074
3,200 0.50%, 8/15/14 3,208,064
11,100 2.25%, 5/31/14 11,217,072
Total U.S. Treasury Obligations (cost-$18,822,776) 18,823,941
U.S. Government Agency Securities (l) – 0.4%
3,400 Federal Home Loan Bank Discount Notes, 0.132%, 7/25/14 3,397,115
1,000 Federal Home Loan Bank Discount Notes, 0.134%, 1/8/14 999,864
Total U.S. Government Agency Securities (cost-$4,396,979) 4,396,979
Total Short-Term Investments (cost-$23,219,755) 23,220,920
Total Investments (cost-$1,043,087,866) – 100.0% $1,072,346,304

November 30, 2013 | Semi-Annual Report 15

Table of Contents

Schedule of Investments

PIMCO Municipal Income Fund II

November 30, 2013 (unaudited) (continued)

Industry classification of portfolio holdings as a percentage of total investments was as follows:

Revenue Bonds:
Health, Hospital & Nursing Home Revenue 23.8 %
Miscellaneous Revenue 8.4
Highway Revenue Tolls 7.1
Industrial Revenue 6.9
Miscellaneous Taxes 6.8
Tobacco Settlement Funded 6.5
Natural Gas Revenue 6.2
Water Revenue 3.9
Electric Power & Light Revenue 3.1
Lease (Appropriation) 2.8
Port, Airport & Marina Revenue 2.5
College & University Revenue 2.3
Sewer Revenue 2.3
Sales Tax Revenue 0.4
Transit Revenue 0.4
Resource Recovery Revenue 0.2
Fuel Sales Tax Revenue 0.1
Lease Revenue 0.1
Total Revenue Bonds 83.8 %
General Obligation 11.6
U.S. Treasury Obligations 1.7
Special Assessment 1.1
Tax Allocation 1.0
U.S. Government Agency Securities 0.4
Certificates of Participation 0.3
Commercial Services 0.1
Total Investments 100.0 %

Notes to Schedule of Investments:

(a) Private Placement–Restricted as to resale and may not have a readily available market. Securities with an aggregate value of $14,769,198, representing 1.4% of total investments.

(b) Illiquid.

(c) Pre-refunded bonds are collateralized by U.S. Government or other eligible securities which are held in escrow and used to pay principal and interest and retire the bonds at the earliest refunding date (payment date).

(d) 144A–Exempt from registration under Rule 144A of the Securities Act of 1933. These securities may be resold in transactions exempt from registration, typically only to qualified institutional buyers. Unless otherwise indicated, these securities are not considered to be illiquid.

(e) When-issued or delayed-delivery. To be settled/delivered after November 30, 2013.

(f) In default.

(g) Inverse Floater–The interest rate shown bears an inverse relationship to the interest rate on another security or the value of an index. The interest rate disclosed reflects the rate in effect on November 30, 2013.

(h) Variable Rate Notes–Instruments whose interest rates change on specified date (such as a coupon date or interest payment date) and/or whose interest rates vary with changes in a designated base rate (such as the prime interest rate). The interest rate disclosed reflects the rate in effect on November 30, 2013.

(i) Residual Interest Bonds held in Trust–Securities represent underlying bonds transferred to a separate securitization trust established in a tender option bond transaction in which the Fund acquired the residual interest certificates. These securities serve as collateral in a financing transaction.

16 Semi-Annual Report | November 30, 2013

Table of Contents

Schedule of Investments

PIMCO Municipal Income Fund II

November 30, 2013 (unaudited) (continued)

(j) Step Bond–Coupon is a fixed rate for an initial period then resets at a specific date and rate.

(k) Restricted. The aggregate acquisition cost of such securities is $14,420,272. The aggregate value is $14,769,198, representing 1.4% of total investments.

(l) Rates reflect the effective yields at purchase date.

(m) Floating Rate Notes–The weighted average daily balance of Floating Rate Notes outstanding during the six months ended November 30, 2013 was $44,453,889 at a weighted average interest rate, including fees, of 0.67%.

(n) Fair Value Measurements–See Note 1(b) in the Notes to Financial Statements.

Investments in Securities – Assets
Municipal Bonds & Notes $1,033,630,221 $1,033,630,221
Variable Rate Notes – 14,697,170 – 14,697,170
Corporate Bonds & Notes – 797,993 – 797,993
Short-Term Investments – 23,220,920 – 23,220,920
Totals $1,072,346,304 $1,072,346,304

At November 30, 2013, there were no transfers between Levels 1 and 2.

(o) The following is a summary of the derivative instruments categorized by risk exposure:

The effect of derivatives on the Statement of Operations for the six months ended November 30, 2013:

Location
Net realized gain on:
Swaps $622,762
Net change in unrealized appreciation/depreciation of:
Swaps $(334,300 )
The average volume (measured at each fiscal quarter-end) of derivative activity during the six months ended November 30, 2013:
Interest
Rate Swap
Agreements(1) $45,333

(1) Notional Amount (in Thousands).

Glossary:

AGC - insured by Assured Guaranty Corp.
AGM - insured by Assured Guaranty Municipal Corp.
AMBAC - insured by American Municipal Bond Assurance Corp.
CP - Certificates of Participation
FGIC - insured by Financial Guaranty Insurance Co.
FHA - insured by Federal Housing Administration
GO - General Obligation Bond
GTD - Guaranteed
IBC - Insurance Bond Certificate
NPFGC - insured by National Public Finance Guarantee Corp.
PSF - Public School Fund

See accompanying Notes to Financial Statements | November 30, 2013 | Semi-Annual Report 17

Table of Contents

Schedule of Investments

PIMCO California Municipal Income Fund II

November 30, 2013 (unaudited)

Principal Amount (000s)
California Municipal Bonds & Notes – 87.7%
$2,000 Alhambra Rev., Atherton Baptist Homes, 7.625%, 1/1/40, Ser. A $2,093,980
20,000 Bay Area Toll Auth. Rev., San Francisco Bay Area, 5.00%, 4/1/39, Ser. F-1 (g) 20,577,800
Chabot-Las Positas Community College Dist., GO, Ser. C,
17,305 zero coupon, 8/1/36 (AMBAC) 4,634,279
5,000 zero coupon, 8/1/37 (AMBAC) 1,246,100
15,000 zero coupon, 8/1/43 (AMBAC) 2,546,100
1,000 Chula Vista Rev., San Diego Gas & Electric, 5.875%, 2/15/34, Ser. B 1,080,880
300 City & Cnty. of San Francisco, Capital Improvement Projects, CP, 5.25%, 4/1/31, Ser. A 318,696
8,920 Coronado Community Dev. Agcy., Tax Allocation, 4.875%, 9/1/35 (AMBAC) 8,952,558
25,000 Desert Community College Dist., GO, zero coupon, 8/1/46, Ser. C (AGM) 3,661,000
8,300 El Dorado Irrigation Dist. & El Dorado Water Agcy., CP, 5.75%, 8/1/39, Ser. A (AGC) 8,475,296
1,500 Foothill-Eastern Transportation Corridor Agcy. Rev., 5.875%, 1/15/27 (IBC-NPFGC) 1,505,805
1,440 Fremont Community Facs. Dist. No. 1, Special Tax, Pacific Commons, 5.30%, 9/1/30 1,435,133
Golden State Tobacco Securitization Corp. Rev.,
13,885 5.00%, 6/1/45 (AMBAC-TCRS) 13,169,089
3,500 5.00%, 6/1/45, Ser. A 3,319,540
6,000 5.00%, 6/1/45, Ser. A (FGIC-TCRS) 5,690,640
8,500 5.125%, 6/1/47, Ser. A-1 5,891,265
31,415 5.75%, 6/1/47, Ser. A-1 24,032,475
Health Facs. Financing Auth. Rev.,
250 Adventist Health System, 5.75%, 9/1/39, Ser. A 268,252
3,000 Catholic Healthcare West, 6.00%, 7/1/39, Ser. A 3,237,990
1,000 Children’s Hospital of Los Angeles, 5.00%, 11/15/34, Ser. A 954,980
500 Children’s Hospital of Orange Cnty., 6.50%, 11/1/38, Ser. A 557,660
4,000 Scripps Health, 5.00%, 11/15/40, Ser. A 4,023,360
3,700 Stanford Hospital, 5.25%, 11/15/40, Ser. A-2 3,848,481
8,755 Stanford Hospital Clinics, 5.00%, 8/15/51, Ser. A 8,651,779
1,000 Sutter Health, 5.00%, 8/15/35, Ser. D 1,017,180
4,220 Sutter Health, 5.00%, 11/15/42, Ser. A (IBC-NPFGC) 4,207,087
12,195 Sutter Health, 5.25%, 11/15/46, Ser. A (g) 12,217,683
4,500 Imperial Irrigation Dist. Rev., 5.00%, 11/1/41, Ser. B 4,520,655
Infrastructure & Economic Dev. Bank Rev.,
175 5.25%, 2/1/38 177,070
10,000 Independent System Operator Corp., 5.00%, 2/1/39 10,146,200
515 Irvine Unified School Dist., Special Tax, 6.70%, 9/1/35 550,859
1,000 Lancaster Redev. Agcy., Tax Allocation, 6.875%, 8/1/39 1,080,090
500 Long Beach Airport Rev., 5.00%, 6/1/40, Ser. A 500,270
7,500 Long Beach Bond Finance Auth. Rev., Long Beach Natural Gas, 5.50%, 11/15/37, Ser. A 7,869,225
10,000 Long Beach Unified School Dist., GO, 5.25%, 8/1/33, Ser. A (g) 10,869,400
Los Angeles Department of Water & Power Rev.,
15,000 4.75%, 7/1/30, Ser. A-2 (AGM) (g) 15,409,950
3,000 5.00%, 7/1/36, Ser. B 3,171,240
11,000 Los Angeles Unified School Dist., GO, 5.00%, 1/1/34, Ser. I 11,527,670
3,200 M-S-R Energy Auth. Rev., 6.50%, 11/1/39, Ser. B 3,798,496
10,000 Manteca Redev. Agcy., Tax Allocation, 5.00%, 10/1/36 (AMBAC) 9,064,300
5,000 Metropolitan Water Dist. of Southern California Rev., 5.00%, 7/1/37, Ser. A (g) 5,251,550
1,175 Municipal Finance Auth. Rev., Azusa Pacific Univ. Project, 7.75%, 4/1/31, Ser. B 1,283,664
5,000 Oakland Unified School Dist., Alameda Cnty., GO, 6.125%, 8/1/29, Ser. A 5,226,300

18 Semi-Annual Report | November 30, 2013

Table of Contents

Schedule of Investments

PIMCO California Municipal Income Fund II

November 30, 2013 (unaudited) (continued)

Principal Amount (000s) — $4,750 Palomar Pomerado Health, CP, 6.75%, 11/1/39 $4,889,032
10,000 Placentia-Yorba Linda Unified School Dist., CP, 5.00%, 10/1/32 (NPFGC) 10,133,300
1,500 Pollution Control Financing Auth. Rev., American Water Capital Corp. Project, 5.25%, 8/1/40 (a)(b)(d)(h) (acquisition cost-$1,500,000; purchased 8/11/10) 1,472,445
Poway Unified School Dist., GO,
11,000 zero coupon, 8/1/40 2,477,860
16,000 zero coupon, 8/1/46 2,480,640
2,000 Roseville Redev. Agcy., Tax Allocation, 5.00%, 9/1/32, Ser. B (NPFGC) 1,936,480
1,375 Ross Valley School Dist., GO, 5.00%, 8/1/42, Ser. B 1,424,761
1,000 San Diego Public Facs. Financing Auth. Sewer Rev., 5.25%, 5/15/39, Ser. A 1,036,340
4,000 San Diego Public Facs. Financing Auth. Water Rev., 5.25%, 8/1/38, Ser. A 4,261,120
2,800 San Diego Regional Building Auth. Rev., Cnty. Operations Center & Annex, 5.375%, 2/1/36, Ser. A 3,003,308
2,800 San Diego Unified School Dist., GO, 4.75%, 7/1/27, Ser. D-2 (AGM) 2,894,472
1,000 San Jose Hotel Tax Rev., Convention Center Expansion, 6.50%, 5/1/36 1,116,100
1,300 San Marcos Unified School Dist., GO, 5.00%, 8/1/38, Ser. A 1,328,951
1,260 Santa Cruz Cnty., CP, 5.25%, 8/1/32 1,268,921
1,500 Santa Cruz Cnty. Redev. Agcy., Tax Allocation, Live Oak/Soquel Community, 7.00%, 9/1/36, Ser. A 1,699,905
State, GO,
2,500 5.00%, 9/1/31 2,635,950
7,000 5.00%, 11/1/43 7,120,120
10,000 6.00%, 4/1/38 11,318,500
State Public Works Board Rev.,
3,000 5.75%, 10/1/30, Ser. G-1 3,312,840
2,000 California State Univ., 6.00%, 11/1/34, Ser. J 2,233,060
2,000 Judicial Council Projects, 5.00%, 12/1/29, Ser. D 2,092,460
2,500 Judicial Council Projects, 5.00%, 3/1/38, Ser. A (b) 2,499,800
7,915 Regents Univ., 5.00%, 3/1/33, Ser. A (Pre-refunded @ $100, 3/1/18) (c) 9,266,090
Statewide Communities Dev. Auth. Rev.,
3,760 Bentley School, 7.00%, 7/1/40, Ser. A 4,018,726
1,520 Catholic Healthcare West, 5.50%, 7/1/31, Ser. D 1,614,970
1,520 Catholic Healthcare West, 5.50%, 7/1/31, Ser. E 1,614,970
250 Huntington Park Charter School Project, 5.15%, 7/1/30, Ser. A (b) 207,610
1,250 Huntington Park Charter School Project, 5.25%, 7/1/42, Ser. A (b) 983,737
500 International School of the Peninsula Project, 5.00%, 11/1/29 471,165
6,705 Kaiser Permanente, 5.00%, 4/1/42, Ser. A 6,674,358
1,000 Lancer Student Housing Project, 7.50%, 6/1/42 1,067,370
9,700 Los Angeles Jewish Home, 5.50%, 11/15/33 (CA Mtg. Ins.) 9,717,654
2,135 Methodist Hospital Project, 6.625%, 8/1/29 (FHA) 2,468,743
7,860 Methodist Hospital Project, 6.75%, 2/1/38 (FHA) 8,872,211
3,700 St. Joseph Health System, 5.75%, 7/1/47, Ser. A (FGIC) 3,923,665
5,490 Sutter Health, 5.25%, 11/15/48, Ser. B 5,500,596
5,600 Sutter Health, 6.00%, 8/15/42, Ser. A 6,148,464
4,500 Univ. of California Irvine E. Campus, 5.375%, 5/15/38 4,496,805
1,800 Tobacco Securitization Agcy. Rev., Stanislaus Cnty., 5.875%, 6/1/43, Ser. A 1,675,368
3,100 Torrance Rev., Torrance Memorial Medical Center, 5.00%, 9/1/40, Ser. A 3,122,692
3,000 Township Health Care Dist, GO, 5.00%, 8/1/43, Ser. B 2,972,310

November 30, 2013 | Semi-Annual Report 19

Table of Contents

Schedule of Investments

PIMCO California Municipal Income Fund II

November 30, 2013 (unaudited) (continued)

Principal Amount (000s) — $1,000 Tustin Unified School Dist., Special Tax, 6.00%, 9/1/40, Ser. 2006-1 $1,033,430
Total California Municipal Bonds & Notes (cost-$362,401,298) 386,549,326
California Variable Rate Notes (a)(b)(d)(e)(f)(h) – 5.6%
6,035 Desert Community College Dist., GO, 9.509%, 8/1/32, Ser. 3016-1 (AGC) (acquisition cost-$5,860,407; purchased 4/17/09) 6,541,578
7,500 JPMorgan Chase Putters/Drivers Trust Rev., 9.543%, 5/15/34, Ser. 3838 (acquisition cost-$7,385,250; purchased 11/10/10) 7,767,600
4,000 Los Angeles Community College Dist., GO, 14.058%, 8/1/33, Ser. 3096 (acquisition cost-$3,986,400; purchased 8/27/09) 4,610,440
5,000 San Diego Community College Dist., GO, 10.044%, 2/1/17 (acquisition cost-$5,117,400; purchased 5/1/09) 5,949,600
Total California Variable Rate Notes (cost-$22,307,724) 24,869,218
Other Municipal Bonds & Notes – 5.5%
Arizona – 1.8%
8,000 Salt Verde Financial Corp. Rev., 5.00%, 12/1/37 7,771,360
New Jersey – 0.7%
Tobacco Settlement Financing Corp. Rev., Ser. 1-A,
1,300 4.75%, 6/1/34 947,089
3,000 5.00%, 6/1/41 2,164,440
3,111,529
New York – 0.6%
1,250 Liberty Dev. Corp. Rev., Goldman Sachs Headquarters, 5.25%, 10/1/35 1,313,325
1,900 TSASC, Inc. Rev., 5.00%, 6/1/34, Ser. 1 1,477,649
2,790,974
Rhode Island – 2.4%
11,000 Tobacco Settlement Financing Corp. Rev., 6.25%, 6/1/42, Ser. 2002-A 10,700,800
Total Other Municipal Bonds & Notes (cost-$22,851,211) 24,374,663
Short-Term Investments – 1.2%
U.S. Treasury Obligations – 1.2%
U.S. Treasury Notes,
300 0.25%, 5/31/14 300,199
4,700 0.50%, 8/15/14 4,711,844
100 0.50%, 10/15/14 100,309
Total U.S. Treasury Obligations (cost-$5,112,746) 5,112,352
Total Investments (cost-$412,672,979) – 100.0% $440,905,559

20 Semi-Annual Report | November 30, 2013

Table of Contents

Schedule of Investments

PIMCO California Municipal Income Fund II

November 30, 2013 (unaudited) (continued)

Industry classification of portfolio holdings as a percentage of total investments was as follows:

Revenue Bonds:
Health, Hospital & Nursing Home Revenue 20.6 %
Tobacco Settlement Funded 13.2
Electric Power & Light Revenue 6.8
Highway Revenue Tolls 5.0
Natural Gas Revenue 4.7
Water Revenue 3.2
Lease (Abatement) 3.0
Miscellaneous Revenue 2.7
College & University Revenue 2.6
Port, Airport & Marina Revenue 1.9
Local or Guaranteed Housing 1.0
Private Schools 1.0
Lease Revenue 0.3
Hotel Occupancy Tax 0.3
Sewer Revenue 0.2
Total Revenue Bonds 66.5 %
General Obligation 20.7
Certificates of Participation 5.7
Tax Allocation 5.2
U.S. Treasury Obligations 1.2
Special Tax 0.7
Total Investments 100.0 %

Notes to Schedule of Investments:

(a) Private Placement–Restricted as to resale and may not have a readily available market. Securities with an aggregate value of $26,341,663, representing 6.0% of total investments.

(b) Illiquid.

(c) Pre-refunded bonds are collateralized by U.S. Government or other eligible securities which are held in escrow and used to pay principal and interest and retire the bonds at the earliest refunding date (payment date).

(d) 144A–Exempt from registration under Rule 144A of the Securities Act of 1933. These securities may be resold in transactions exempt from registration, typically only to qualified institutional buyers. Unless otherwise indicated, these securities are not considered to be illiquid.

(e) Inverse Floater–The interest rate shown bears an inverse relationship to the interest rate on another security or the value of an index. The interest rate disclosed reflects the rate in effect on November 30, 2013.

(f) Variable Rate Notes–Instruments whose interest rates change on specified date (such as a coupon date or interest payment date) and/or whose interest rates vary with changes in a designated base rate (such as the prime interest rate). The interest rate disclosed reflects the rate in effect on November 30, 2013.

(g) Residual Interest Bonds held in Trust–Securities represent underlying bonds transferred to a separate securitization trust established in a tender option bond transaction in which the Fund acquired the residual interest certificates. These securities serve as collateral in a financing transaction.

(h) Restricted. The aggregate acquisition cost of such securities is $23,849,457. The aggregate value is $26,341,663, representing 6.0% of total investments.

(i) Floating Rate Notes–The weighted average daily balance of Floating Rate Notes outstanding during the six months ended November 30, 2013 was $38,098,801 at a weighted average interest rate, including fees, of 0.53%.

November 30, 2013 | Semi-Annual Report 21

Table of Contents

Schedule of Investments

PIMCO California Municipal Income Fund II

November 30, 2013 (unaudited) (continued)

(j) Fair Value Measurements-See Note 1(b) in the Notes to Financial Statements.

Investments in Securities – Assets
California Municipal Bonds & Notes $386,549,326 $386,549,326
California Variable Rate Notes – 24,869,218 – 24,869,218
Other Municipal Bonds & Notes – 24,374,663 – 24,374,663
Short-Term Investments – 5,112,352 – 5,112,352
Totals $440,905,559 $440,905,559

At November 30, 2013, there were no transfers between Levels 1 and 2.

(k) The following is a summary of the derivative instruments categorized by risk exposure:

The effect of derivatives on the Statement of Operations for the six months ended November 30, 2013:

Location
Net realized gain on:
Swaps $205,965
Net change in unrealized appreciation/depreciation of:
Swaps $(119,661 )
The average volume (measured at each fiscal quarter-end) of derivative activity during the six months ended November 30, 2013:
Interest
Rate Swap
Agreements(1) $17,667

(1) Notional Amount (in Thousands)

Glossary:

AGC - insured by Assured Guaranty Corp.
AGM - insured by Assured Guaranty Municipal Corp.
AMBAC - insured by American Municipal Bond Assurance Corp.
CA Mtg. Ins. - insured by California Mortgage Insurance
CP - Certificates of Participation
FGIC - insured by Financial Guaranty Insurance Co.
FHA - insured by Federal Housing Administration
GO - General Obligation Bond
IBC - Insurance Bond Certificate
NPFGC - insured by National Public Finance Guarantee Corp.
TCRS - Temporary Custodian Receipts

22 Semi-Annual Report | November 30, 2013 | See accompanying Notes to Financial Statements

Table of Contents

Schedule of Investments

PIMCO New York Municipal Income Fund II

November 30, 2013 (unaudited)

Principal Amount (000s)
New York Municipal Bonds & Notes – 90.3%
$1,000 Chautauqua Cnty. Industrial Dev. Agcy. Rev., Dunkirk Power Project, 5.875%, 4/1/42 $1,017,190
150 Erie Cnty. Industrial Dev. Agcy. Rev., Orchard Park, Inc. Project, 6.00%, 11/15/36, Ser. A 130,832
9,000 Hudson Yards Infrastructure Corp. Rev., 5.75%, 2/15/47, Ser. A 9,604,620
Liberty Dev. Corp. Rev.,
1,400 Bank of America Tower at One Bryant Park Project, 5.625%, 7/15/47 1,482,530
1,300 Bank of America Tower at One Bryant Park Project, 6.375%, 7/15/49 1,396,616
2,230 Goldman Sachs Headquarters, 5.25%, 10/1/35 2,342,972
4,120 Goldman Sachs Headquarters, 5.25%, 10/1/35 (g) 4,328,719
3,500 Goldman Sachs Headquarters, 5.50%, 10/1/37 3,757,075
500 Long Island Power Auth. Rev., 5.00%, 9/1/34, Ser. A (AMBAC) 501,115
Metropolitan Transportation Auth. Rev.,
2,000 5.00%, 11/15/30, Ser. D 2,095,460
2,000 5.00%, 11/15/34, Ser. B 2,085,520
3,000 5.00%, 11/15/43, Ser. B 3,022,380
5,000 5.50%, 11/15/39, Ser. A 5,246,550
Monroe Cnty. Industrial Dev. Corp. Rev.,
3,500 Unity Hospital Rochester Project, 5.50%, 8/15/40 (FHA) 3,645,180
1,750 University of Rochester, 5.00%, 7/1/43, Ser. A 1,810,515
2,400 Nassau Cnty. Industrial Dev. Agcy. Rev., Amsterdam at Harborside, 6.70%, 1/1/43, Ser. A 1,307,640
2,000 New York City, GO, 5.00%, 8/1/31, Ser. D1 2,143,900
1,500 New York City Health & Hospital Corp. Rev., 5.00%, 2/15/30, Ser. A 1,563,120
New York City Industrial Dev. Agcy. Rev.,
1,415 Liberty Interactive Corp., 5.00%, 9/1/35 1,400,086
1,500 Pilot Queens Baseball Stadium, 6.50%, 1/1/46 (AGC) 1,621,995
1,500 United Jewish Appeal Federation Project, 5.00%, 7/1/27, Ser. A 1,531,680
750 Yankee Stadium, 5.00%, 3/1/31 (FGIC) 756,630
1,900 Yankee Stadium, 5.00%, 3/1/36 (NPFGC) 1,909,025
4,900 Yankee Stadium, 7.00%, 3/1/49 (AGC) 5,613,440
New York City Transitional Finance Auth. Rev.,
10 5.00%, 11/1/27, Ser. B 10,030
4,850 5.00%, 5/1/39, Ser. F-1 5,055,931
5,000 5.25%, 1/15/39, Ser. S-3 5,324,300
New York City Water & Sewer System Rev.,
1,000 5.25%, 6/15/40, Ser. EE 1,058,410
500 Second Generation Resolutions, 5.00%, 6/15/39, Ser. GG-1 516,065
New York Liberty Dev. Corp. Rev.,
3,000 1 World Trade Center Project, 5.00%, 12/15/41 3,073,680
10,000 4 World Trade Center Project, 5.75%, 11/15/51 10,668,900
1,000 Onondaga Cnty. Rev., Syracuse Univ. Project, 5.00%, 12/1/36 1,037,330
1,400 Port Auth. of New York & New Jersey Rev., JFK International Air Terminal, 6.00%, 12/1/36 1,513,442
State Dormitory Auth. Rev.,
3,000 5.00%, 3/15/38, Ser. A 3,204,630
2,500 5.00%, 2/15/40, Ser. D 2,591,675
4,000 5.00%, 7/1/42, Ser. A 4,129,360
7,490 5.50%, 5/15/31, Ser. A (AMBAC) 8,446,847
2,600 Catholic Health of Long Island, 5.10%, 7/1/34 2,567,292
1,500 Fordham Univ., 5.50%, 7/1/36, Ser. A 1,591,380

November 30, 2013 | Semi-Annual Report 23

Table of Contents

Schedule of Investments

PIMCO New York Municipal Income Fund II

November 30, 2013 (unaudited) (continued)

Principal Amount (000s) — $2,750 Memorial Sloan-Kettering Cancer Center, 5.00%, 7/1/35, Ser. 1 $2,782,973
2,000 Memorial Sloan-Kettering Cancer Center, 5.00%, 7/1/36, Ser. A-1 2,041,700
2,000 Mount Sinai Hospital, 5.00%, 7/1/31, Ser. A 2,067,420
2,100 New York Univ., 5.00%, 7/1/38, Ser. A 2,185,155
1,000 New York Univ. Hospital Center, 5.625%, 7/1/37, Ser. B 1,054,280
600 North Shore-Long Island Jewish Health System, 5.50%, 5/1/37, Ser. A 629,082
5,000 Rochester General Hospital, 5.00%, 12/1/35 (Radian) (Pre-refunded @ $100, 12/1/15) (c) 5,444,300
3,000 Teachers College, 5.50%, 3/1/39 3,086,280
1,000 The New School, 5.50%, 7/1/40 1,044,190
3,000 Yeshiva Univ., 5.125%, 7/1/34 (AMBAC) 3,015,660
5,000 State Environmental Facs. Corp. Rev., 5.125%, 6/15/38, Ser. A 5,348,200
State Thruway Auth. Rev.,
1,000 4.75%, 1/1/29, Ser. G (AGM) 1,024,530
3,800 5.00%, 1/1/42, Ser. I 3,878,280
6,000 State Urban Dev. Corp. Rev., 5.00%, 3/15/36, Ser. B-1 (g) 6,388,500
5,000 Triborough Bridge & Tunnel Auth. Rev., 5.25%, 11/15/34, Ser. A-2 (g) 5,271,000
3,435 Troy Capital Res. Corp. Rev., Rensselaer Polytechnic Institute Project, 5.125%, 9/1/40, Ser. A 3,496,418
TSASC, Inc. Rev., Ser. 1,
5,000 5.00%, 6/1/26 4,419,900
5,000 5.00%, 6/1/34 3,888,550
1,000 5.125%, 6/1/42 742,570
1,815 Ulster Cnty. Industrial Dev. Agcy. Rev., 6.00%, 9/15/37, Ser. A (b) 1,399,038
2,000 Warren & Washington Cntys. Industrial Dev. Agcy. Rev., Glens Falls Hospital Project, 5.00%, 12/1/35, Ser. A (AGM) 2,000,580
1,490 Westchester Cnty. Healthcare Corp. Rev., 6.125%, 11/1/37, Ser. C-2 1,625,858
1,000 Yonkers Economic Dev. Corp. Rev., Charter School of Educational Excellence Project, 6.00%, 10/15/30, Ser. A 1,002,140
600 Yonkers Industrial Dev. Agcy. Rev., Sarah Lawrence College Project, 6.00%, 6/1/41, Ser. A 637,368
Total New York Municipal Bonds & Notes (cost-$172,805,496) 175,578,034
Other Municipal Bonds & Notes – 4.8%
Florida – 0.5%
1,000 Clearwater Water & Sewer Rev., 5.25%, 12/1/39, Ser. A 1,039,540
Louisiana – 0.6%
1,000 East Baton Rouge Sewerage Commission Rev., 5.25%, 2/1/39, Ser. A 1,053,400
Ohio – 3.2%
7,450 Buckeye Tobacco Settlement Financing Auth. Rev., 6.50%, 6/1/47, Ser. A-2 6,228,200
U. S. Virgin Islands – 0.5%
1,000 Public Finance Auth. Rev., 6.00%, 10/1/39, Ser. A 1,009,180
Total Other Municipal Bonds & Notes (cost-$9,864,041) 9,330,320
New York Variable Rate Notes – 2.8%
5,000 JPMorgan Chase Putters/Drivers Trust Rev., 9.49%, 7/1/33, Ser. 3382 (a)(b)(d)(e)(f)(h) (acquisition cost-$4,876,400; purchased 4/2/09) (cost-$4,884,395) 5,417,150

24 Semi-Annual Report | November 30, 2013

Table of Contents

Schedule of Investments

PIMCO New York Municipal Income Fund II

November 30, 2013 (unaudited) (continued)

Principal Amount (000s)
Short-Term Investments – 2.1%
U.S. Treasury Obligations – 2.1%
U.S. Treasury Notes,
$1,100 0.25%, 5/31/14 $1,100,730
262 0.25%, 8/31/14 262,215
900 0.50%, 8/15/14 902,268
1,800 0.50%, 10/15/14 1,805,555
Total U.S. Treasury Obligations (cost-$4,070,920) 4,070,768
Total Investments (cost-$191,624,852) – 100.0% $194,396,272

Industry classification of portfolio holdings as a percentage of total investments was as follows:

Revenue Bonds:
Health, Hospital & Nursing Home Revenue 14.5 %
College & University Revenue 14.1
Industrial Revenue 10.2
Income Tax Revenue 8.9
Miscellaneous Revenue 8.0
Tobacco Settlement Funded 7.9
Transit Revenue 6.4
Highway Revenue Tolls 5.2
Miscellaneous Taxes 4.9
Lease (Abatement) 4.4
Recreational Revenue 4.3
Water Revenue 4.1
Port, Airport & Marina Revenue 2.4
Economic Development Revenue 0.7
Sewer Revenue 0.5
Electric Power & Light Revenue 0.3
Total Revenue Bonds 96.8 %
U.S. Treasury Obligations 2.1
General Obligation 1.1
Total Investments 100.0 %

Notes to Schedule of Investments:

(a) Private Placement–Restricted as to resale and may not have a readily available market. Security with a value of $5,417,150, representing 2.8% of total investments.

(b) Illiquid.

(c) Pre-refunded bonds are collateralized by U.S. Government or other eligible securities which are held in escrow and used to pay principal and interest and retire the bonds at the earliest refunding date (payment date).

(d) 144A–Exempt from registration under Rule 144A of the Securities Act of 1933. These securities may be resold in transactions exempt from registration, typically only to qualified institutional buyers. Unless otherwise indicated, these securities are not considered to be illiquid.

(e) Inverse Floater–The interest rate shown bears an inverse relationship to the interest rate on another security or the value of an index. The interest rate disclosed reflects the rate in effect on November 30, 2013.

(f) Variable Rate Notes–Instruments whose interest rates change on specified date (such as a coupon date or interest payment date) and/or whose interest rates vary with changes in a designated base rate (such as the prime interest rate). The interest rate disclosed reflects the rate in effect on November 30, 2013.

November 30, 2013 | Semi-Annual Report 25

Table of Contents

Schedule of Investments

PIMCO New York Municipal Income Fund II

November 30, 2013 (unaudited) (continued)

(g) Residual Interest Bonds held in Trust–Securities represent underlying bonds transferred to a separate securitization trust established in a tender option bond transaction in which the Fund acquired the residual interest certificates. These securities serve as collateral in a financing transaction.

(h) Restricted. The aggregate acquisition cost of such security is $4,876,400. The aggregate value is $5,417,150, representing 2.8% of total investments.

(i) Floating Rate Notes–The weighted average daily balance of Floating Rate Notes outstanding during the six months ended November 30, 2013 was $8,313,867 at a weighted average interest rate, including fees, of 0.83%.

(j) Fair Value Measurements-See Note 1(b) in the Notes to Financial Statements.

Investments in Securities – Assets
New York Municipal Bonds & Notes $175,578,034 $175,578,034
Other Municipal Bonds & Notes – 9,330,320 – 9,330,320
New York Variable Rate Notes – 5,417,150 – 5,417,150
Short-Term Investments – 4,070,768 – 4,070,768
Totals $194,396,272 $194,396,272

At November 30, 2013, there were no transfers between Levels 1 and 2.

(k) The following is a summary of the derivative instruments categorized by risk exposure:

The effect of derivatives on the Statement of Operations for the six months ended November 30, 2013:

Location
Net realized gain on:
Swaps $144,467
Net change in unrealized appreciation/depreciation of:
Swaps $(89,478 )
The average volume (measured at each fiscal quarter-end) of derivatives activity during the six months ended November 30, 2013
Interest
Rate Swap
Agreements(1) $12,000

(1) Notional Amount (in Thousands)

Glossary:

AGC - insured by Assured Guaranty Corp.
AGM - insured by Assured Guaranty Municipal Corp.
AMBAC - insured by American Municipal Bond Assurance Corp.
FGIC - insured by Financial Guaranty Insurance Co.
FHA - insured by Federal Housing Administration
GO - General Obligation Bond
NPFGC - insured by National Public Finance Guarantee Corp.
Radian - insured by Radian Guaranty, Inc.

26 Semi-Annual Report | November 30, 2013 | See accompanying Notes to Financial Statements

Table of Contents

Statements of Assets and Liabilities

PIMCO Municipal Income Funds II

November 30, 2013 (unaudited)

Assets:
Investments, at value (cost-$1,043,087,866, $412,672,979 and $191,624,852, respectively) $1,072,346,304 $440,905,559 $194,396,272
Cash 595,025 571,310 570,550
Interest receivable 18,196,708 6,734,893 2,990,153
Receivable for investments sold 16,206,447 – –
Prepaid expenses and other assets 64,726 64,564 29,805
Total Assets 1,107,409,210 448,276,326 197,986,780
Liabilities:
Payable for floating rate notes issued 44,317,277 38,098,801 8,186,394
Payable for investments purchased 24,460,600 – –
Dividends payable to common and preferred shareholders 3,970,140 1,981,135 726,445
Investment management fees payable 552,026 217,782 100,710
Interest payable 77,822 13,835 10,407
Accrued expenses and other liabilities 333,563 157,847 285,471
Total Liabilities 73,711,428 40,469,400 9,309,427
Preferred Shares ($0.00001 par value and $25,000 liquidation preference per share applicable to an aggregate of 14,680, 6,520 and 3,160 shares issued and outstanding, respectively) 367,000,000 163,000,000 79,000,000
Net Assets Applicable to Common Shareholders $666,697,782 $244,806,926 $109,677,353
Composition of Net Assets Applicable to Common Shareholders:
Common Shares:
Par value ($0.00001 per share) $610 $317 $110
Paid-in-capital in excess of par 811,966,453 412,145,941 148,172,140
Undistributed (dividends in excess of) net investment income 22,890,985 (3,444,887) 1,542,836
Accumulated net realized loss (197,415,890) (192,128,491) (42,820,602)
Net unrealized appreciation 29,255,624 28,234,046 2,782,869
Net Assets Applicable to Common Shareholders $666,697,782 $244,806,926 $109,677,353
Common Shares Issued and Outstanding 61,029,334 31,675,550 10,955,880
Net Asset Value Per Common Share $10.92 $7.73 $10.01

See accompanying Notes to Financial Statements | November 30, 2013 | Semi-Annual Report 27

Table of Contents

Statements of Operations

PIMCO Municipal Income Funds II

Six Months ended November 30, 2013 (unaudited)

Investment Income:
Interest $28,292,382 $12,348,981 $4,904,143
Consent fees 90,000 – –
Total Investment Income 28,382,382 12,348,981 4,904,143
Expenses:
Investment management 3,382,788 1,334,998 615,801
Auction agent and commissions 288,591 134,997 64,673
Interest 151,868 101,698 35,089
Audit and tax services 105,437 32,361 30,333
Custodian and accounting agent 78,708 48,192 34,135
Shareholder communications 35,438 20,516 11,631
Trustees 29,488 11,452 5,260
New York Stock Exchange listing 28,339 14,671 12,406
Transfer agent 11,897 13,194 13,800
Legal 8,232 6,456 5,677
Insurance 7,514 3,825 2,497
Miscellaneous 6,870 5,601 4,994
Total Expenses 4,135,170 1,727,961 836,296
Net Investment Income 24,247,212 10,621,020 4,067,847
Realized and Change in Unrealized Gain (Loss):
Net realized gain (loss) on:
Investments (2,408,905) (3,935,297) (108,172)
Swaps 622,762 205,965 144,467
Net change in unrealized appreciation/depreciation of:
Investments (74,258,993) (32,769,499) (13,924,359)
Swaps (334,300) (119,661) (89,478)
Net realized and change in unrealized loss (76,379,436) (36,618,492) (13,977,542)
Net Decrease in Net Assets Resulting from Investment Operations (52,132,224) (25,997,472) (9,909,695)
Dividends on Preferred Shares from Net Investment Income (223,031) (99,057) (48,479)
Net Decrease in Net Assets Applicable to Common Shareholders Resulting from Investment Operations $(52,355,255) $(26,096,529) $(9,958,174)

28 Semi-Annual Report | November 30, 2013 | See accompanying Notes to Financial Statements

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November 30, 2013 | Semi-Annual Report 29

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Statements of Changes in Net Assets

Applicable to Common Shareholders

PIMCO Municipal Income Funds II

Six Months ended November 30, 2013 (unaudited) Year ended May 31, 2013
Investment Operations:
Net investment income $24,247,212 $50,453,284
Net realized gain (loss) (1,786,143) 4,106,105
Net change in unrealized appreciation/depreciation (74,593,293) 9,719,063
Net increase (decrease) in net assets resulting from investment operations (52,132,224) 64,278,452
Dividends on Preferred Shares from Net Investment Income (223,031) (901,014)
Net increase (decrease) in net assets applicable to common shareholders resulting from investment operations (52,355,255) 63,377,438
Dividends to Common Shareholders from:
Net investment income (23,777,031) (47,407,514)
Return of capital – –
Total dividends and distributions to common shareholders (23,777,031) (47,407,514)
Common Share Transactions:
Reinvestment of dividends 1,462,515 3,236,891
Total increase (decrease) in net assets applicable to common shareholders (74,669,771) 19,206,815
Net Assets Applicable to Common Shareholders:
Beginning of period 741,367,553 722,160,738
End of period* $666,697,782 $741,367,553
*Including undistributed (dividends in excess of) net investment income of: $22,890,985 $22,643,835
Common Shares Issued in Reinvestment of Dividends 132,707 257,784

30 Semi-Annual Report | November 30, 2013 | See accompanying Notes to Financial Statements

Table of Contents

California Municipal II — Six Months ended November 30, 2013 (unaudited) Year ended May 31, 2013 New York Municipal II — Six Months ended November 30, 2013 (unaudited) Year ended May 31, 2013
$10,621,020 $21,709,832 $4,067,847 $8,604,979
(3,729,332) 3,108,299 36,295 292,763
(32,889,160) 7,700,006 (14,013,837) (612,931)
(25,997,472) 32,518,137 (9,909,695) 8,284,811
(99,057) (402,646) (48,479) (194,449)
(26,096,529) 32,115,491 (9,958,174) 8,090,362
(11,868,172) (21,313,126) (4,350,125) (8,669,854)
– (2,354,016) – –
(11,868,172) (23,667,142) (4,350,125) (8,669,854)
590,692 1,162,949 300,494 597,357
(37,374,009) 9,611,298 (14,007,805) 17,865
282,180,935 272,569,637 123,685,158 123,667,293
$244,806,926 $282,180,935 $109,677,353 $123,685,158
$(3,444,887) $(2,098,678) $1,542,836 $1,873,593
65,223 113,525 28,558 47,813

See accompanying Notes to Financial Statements | November 30, 2013 | Semi-Annual Report 31

Table of Contents

Notes to Financial Statements

PIMCO Municipal Income Funds II

November 30, 2013 (unaudited)

1. Organization and Significant Accounting Policies

PIMCO Municipal Income Fund II (‘‘Municipal II’’), PIMCO California Municipal Income Fund II (‘‘California Municipal II’’) and PIMCO New York Municipal Income Fund II (‘‘New York Municipal II’’), (each a “Fund” and collectively the ‘‘Funds’’ or ‘‘PIMCO Municipal Income Funds II’’), were organized as Massachusetts business trusts on March 29, 2002. Prior to commencing operations on June 28, 2002, the Funds had no operations other than matters relating to their organization and registration as non-diversified, closed-end management investment companies registered under the Investment Company Act of 1940 and the rules and regulations thereunder, as amended. Allianz Global Investors Fund Management LLC (the “Investment Manager”) and Pacific Investment Management Company LLC (“PIMCO” or the “Sub-Adviser”) serve as the Funds’ investment manager and sub-adviser, respectively, and are both indirect, wholly-owned subsidiaries of Allianz Asset Management of America L.P. (“AAM”). AAM is an indirect, wholly-owned subsidiary of Allianz SE, a publicly traded European insurance and financial services company. Each Fund has an unlimited amount of no par value per share of common shares authorized.

Under normal market conditions, Municipal II invests substantially all of its assets in a portfolio of municipal bonds, the interest from which is exempt from U.S. federal income taxes. Under normal market conditions, California Municipal II invests substantially all of its assets in municipal bonds which pay interest that is exempt from federal and California state income taxes. Under normal market conditions, New York Municipal II invests substantially all of its assets in municipal bonds which pay interest that is exempt from federal, New York State and New York City income taxes. There can be no assurance that the Funds will meet their stated objectives. The Funds will generally seek to avoid investing in

bonds generating interest income which could potentially subject individuals to alternative minimum tax. The issuers’ abilities to meet their obligations may be affected by economic and political developments in a specific state or region.

The preparation of the Funds’ financial statements in accordance with accounting principles generally accepted in the United States of America requires the Funds’ management to make estimates and assumptions that affect the reported amounts and disclosures in each Fund’s financial statements. Actual results could differ from those estimates.

In the normal course of business, the Funds enter into contracts that contain a variety of representations that provide general indemnifications. The Funds’ maximum exposure under these arrangements is unknown as this would involve future claims that may be made against the Funds that have not yet occurred.

The following is a summary of significant accounting policies consistently followed by the Funds:

(a) Valuation of Investments

Portfolio securities and other financial instruments for which market quotations are readily available are stated at market value. Market value is generally determined on the basis of last reported sales prices, or if no sales are reported, on the basis of quotes obtained from a quotation reporting system, established market makers, or independent pricing services. The Funds’ investments are valued daily using prices supplied by an independent pricing service or dealer quotations, or by using the last sale price on the exchange that is the primary market for such securities, or the mean between the last quoted bid and ask price.

32 Semi-Annual Report | November 30, 2013

Table of Contents

Notes to Financial Statements

PIMCO Municipal Income Funds II

November 30, 2013 (unaudited)

1. Organization and Significant Accounting Policies (continued)

Independent pricing services use information provided by market makers or estimates of market values obtained from yield data relating to investments or securities with similar characteristics. Securities purchased on a when-issued or delayed-delivery basis are marked to market daily until settlement at the forward settlement date.

The Board of Trustees (the “Board”) has adopted procedures for valuing portfolio securities and other financial derivative instruments in circumstances where market quotes are not readily available, and has delegated the responsibility for applying the valuation methods to the Investment Manager and Sub-Adviser. The Funds’ Valuation Committee was established by the Board to oversee the implementation of the Funds’ valuation methods and to make fair value determinations on behalf of the Board, as instructed. The Sub-Adviser monitors the continued appropriateness of methods applied and determines if adjustments should be made in light of market changes, events affecting the issuer, or other factors. If the Sub-Adviser determines that a valuation method may no longer be appropriate, another valuation method may be selected, or the Valuation Committee will be convened to consider the matter and take any appropriate action in accordance with procedures set forth by the Board. The Board shall review the appropriateness of the valuation methods and these methods may be amended or supplemented from time to time by the Valuation Committee.

Short-term securities maturing in 60 days or less are valued at amortized cost, if their original term to maturity was 60 days or less, or by amortizing their value on the 61 st day prior to maturity, if the original term to maturity exceeded 60 days.

The prices used by the Funds to value investments may differ from the value that would be realized if the investments were sold, and these differences could be material to the Funds’ financial statements. Each Fund’s net asset value (“NAV”) is normally determined as of the close of regular trading (normally, 4:00 p.m. Eastern time) on the New York Stock Exchange (“NYSE”) on each day the NYSE is open for business.

(b) Fair Value Measurements

Fair value is defined as the price that would be received to sell an asset or paid to transfer a liability ( i.e. the “exit price”) in an orderly transaction between market participants. The three levels of the fair value hierarchy are described below:

n Level 1 – quoted prices in active markets for identical investments that the Funds have the ability to access

n Level 2 – valuations based on other significant observable inputs, which may include, but are not limited to, quoted prices for similar assets or liabilities, interest rates, yield curves, volatilities, prepayment speeds, loss severities, credit risks and default rates or other market corroborated inputs

n Level 3 – valuations based on significant unobservable inputs (including the Sub-Adviser’s or Valuation Committee’s own assumptions and securities whose price was determined by using a single broker’s quote)

The valuation techniques used by the Funds to measure fair value during the six months ended November 30, 2013 were intended to maximize the use of observable inputs and to minimize the use of unobservable inputs.

The Funds’ policy is to recognize transfers between levels at the end of the reporting period. An investment asset’s or liability’s level within the fair value hierarchy is based on the lowest level input, individually or in aggregate,

November 30, 2013 | Semi-Annual Report 33

Table of Contents

Notes to Financial Statements

PIMCO Municipal Income Funds II

November 30, 2013 (unaudited)

1. Organization and Significant Accounting Policies (continued)

that is significant to the fair value measurement. The objective of fair value measurement remains the same even when there is a significant decrease in the volume and level of activity for an asset or liability and regardless of the valuation techniques used. Investments categorized as Level 1 or 2 as of period end may have been transferred between Levels 1 and 2 since the prior period due to changes in the valuation method utilized in valuing the investments.

The inputs or methodology used for valuing securities are not necessarily an indication of the risk associated with investing in those securities. The following are certain inputs and techniques that the Funds generally use to evaluate how to classify each major category of assets and liabilities for Level 2 and Level 3, in accordance with Generally Accepted Accounting Principles (“GAAP”).

U.S. Treasury Obligations – U.S. Treasury obligations are valued by independent pricing services based on pricing models that evaluate the mean between the most recently quoted bid and ask price. The models also take into consideration data received from active market makers and broker-dealers, yield curves, and the spread over comparable U.S. Treasury issues. The spreads change daily in response to market conditions and are generally obtained from the new issue market and broker-dealer sources. To the extent that these inputs are observable, the values of U.S. Treasury obligations are categorized as Level 2. To the extent that these inputs are unobservable, the values are categorized as Level 3.

Government Sponsored Enterprise and Mortgage-Backed Securities – Government sponsored enterprise and mortgage-backed securities are valued by independent pricing services using pricing models based on inputs

that include issuer type, coupon, cash flows, mortgage prepayment projection tables and Adjustable Rate Mortgage evaluations that incorporate index data, periodic and life caps, the next coupon reset date. To the extent that these inputs are observable, the values of government sponsored enterprise and mortgage-backed securities are categorized as Level 2. To the extent that these inputs are unobservable, the values are categorized as Level 3.

Municipal Bonds & Notes and Variable Rate Notes – Municipal bonds & notes and variable rate notes are valued by independent pricing services based on pricing models that take into account, among other factors, information received from market makers and broker-dealers, current trades, bid-want lists, offerings, market movements, the callability of the bond, state of issuance, benchmark yield curves, and bond or note insurance. To the extent that these inputs are observable, the values of municipal bonds & notes and variable rate notes are categorized as Level 2. To the extent that these inputs are unobservable, the values are categorized as Level 3.

Corporate Bonds & Notes – Corporate bonds & notes are generally comprised of two main categories: investment grade bonds and high yield bonds. Investment grade bonds are valued by independent pricing services using various inputs and techniques, which include broker-dealer quotations, live trading levels, recently executed transactions in securities of the issuer or comparable issuers, and option adjusted spread models that include base curve and spread curve inputs. Adjustments to individual bonds can be applied to recognize trading differences compared to other bonds issued by the same issuer. High yield bonds are valued by independent pricing services based primarily on broker-dealer quotations from relevant market makers and recently executed transactions in

34 Semi-Annual Report | November 30, 2013

Table of Contents

Notes to Financial Statements

PIMCO Municipal Income Funds II

November 30, 2013 (unaudited)

1. Organization and Significant Accounting Policies (continued)

securities of the issuer or comparable issuers. The broker-dealer quotations received are supported by credit analysis of the issuer that takes into consideration credit quality assessments, daily trading activity, and the activity of the underlying equities, listed bonds and sector-specific trends. To the extent that these inputs are observable, the values of corporate bonds & notes are categorized as Level 2. To the extent that these inputs are unobservable, the values are categorized as Level 3.

(c) Investment Transactions and Investment Income

Investment transactions are accounted for on the trade date. Securities purchased and sold on a when-issued or delayed-delivery basis may be settled a month or more after the trade date. Realized gains and losses on investments are determined on an identified cost basis. Interest income adjusted for the accretion of discount and amortization of premiums is recorded on an accrual basis. Discounts or premiums on debt securities purchased are accreted or amortized, respectively, to interest income.

(d) Federal Income Taxes

The Funds intend to distribute all of their taxable income and to comply with the other requirements of Subchapter M of the U.S. Internal Revenue Code of 1986, as amended, applicable to regulated investment companies. Accordingly, no provision for U.S. federal income taxes is required.

Accounting for uncertainty in income taxes establishes for all entities, including pass-through entities such as the Funds, a minimum threshold for financial statement recognition of the benefit of positions taken in filing tax returns (including whether an entity is taxable in a particular jurisdiction), and requires certain

expanded tax disclosures. In accordance with provisions set forth under U.S. GAAP, the Investment Manager has reviewed the Funds’ tax positions for all open tax years. As of November 30, 2013, the Funds have recorded no liability for net unrecognized tax benefits relating to uncertain income tax positions they have taken. The Funds’ federal income tax returns for the prior three years remain subject to examination by the Internal Revenue Service.

(e) Dividends and Distributions – Common Shares

The Funds declare dividends from net investment income to common shareholders monthly. Distributions of net realized capital gains, if any, are paid at least annually. The Funds record dividends and distributions on the ex-dividend date. The amount of dividends from net investment income and distributions from net realized capital gains is determined in accordance with federal income tax regulations, which may differ from GAAP. These “book-tax” differences are considered either temporary or permanent in nature. To the extent these differences are permanent in nature, such amounts are reclassified within the capital accounts based on their federal income tax treatment; temporary differences do not require reclassification. To the extent dividends and/or distributions exceed current and accumulated earnings and profits for federal income tax purposes, they are reported as dividends and/or distributions to shareholders from return of capital.

(f) Inverse Floating Rate Transactions – Residual Interest Municipal Bonds (“RIBs”) / Residual Interest Tax Exempt Bonds (“RITEs”)

The Funds invest in RIBs and RITEs (“Inverse Floaters”), whose interest rates bear an inverse relationship to the interest rate on another security or the value of an index. In inverse floating rate transactions, the Funds sell a fixed

November 30, 2013 | Semi-Annual Report 35

Table of Contents

Notes to Financial Statements

PIMCO Municipal Income Funds II

November 30, 2013 (unaudited)

1. Organization and Significant Accounting Policies (continued)

rate municipal bond (“Fixed Rate Bond”) to a broker who places the Fixed Rate Bond in a special purpose trust (“Trust”) from which floating rate bonds (“Floating Rate Notes”) and Inverse Floaters are issued. The Funds simultaneously or within a short period of time, purchase the Inverse Floaters from the broker. The Inverse Floaters held by the Funds provide the Funds with the right to: (1) cause the holders of the Floating Rate Notes to tender their notes at par, and (2) cause the broker to transfer the Fixed-Rate Bond held by the Trust to the Funds, thereby collapsing the Trust. The Funds account for the transaction described above as a secured borrowing by including the Fixed Rate Bond in their Schedules of Investments, and account for the Floating Rate Notes as a liability under the caption “Payable for Floating Rate Notes issued” in the Funds’ Statements of Assets and Liabilities. The Floating Rate Notes have interest rates that generally reset weekly and their holders have the option to tender their notes to the broker for redemption at par at each reset date.

The Funds may also invest in Inverse Floaters without transferring a fixed rate municipal bond into a Trust, which are not accounted for as secured borrowings. The Funds may also invest in Inverse Floaters for the purpose of increasing leverage.

The Inverse Floaters are created by dividing the income stream provided by the underlying bonds to create two securities, one short-term and one long-term. The interest rate on the short-term component is reset by an index or auction process typically every 7 to 35 days. After income is paid on the short-term securities at current rates, the residual income from the underlying bond(s) goes to the long-term securities. Therefore, rising short-term rates result in lower income for the long-term

component and vice versa. The longer-term bonds may be more volatile and less liquid than other municipal bonds of comparable maturity. Investments in Inverse Floaters typically will involve greater risk than in an investment in Fixed Rate Bonds.

The Funds’ restrictions on borrowings do not apply to the secured borrowings deemed to have occurred for accounting purposes. Inverse Floaters held by the Funds are exempt from registration under Rule 144A of the Securities Act of 1933.

In addition to general market risks, the Funds’ investments in Inverse Floaters may involve greater risk and volatility than an investment in a fixed rate bond, and the value of Inverse Floaters may decrease significantly when market interest rates increase. Inverse Floaters have varying degrees of liquidity, and the market for these securities may be volatile. These securities tend to underperform the market for fixed rate bonds in a rising interest rate environment, but tend to outperform the market for fixed rate bonds when interest rates decline or remain relatively stable. Although volatile, Inverse Floaters typically offer the potential for yields exceeding the yields available on fixed rate bonds with comparable credit quality, coupon, call provisions and maturity. Trusts in which Inverse Floaters may be held could be terminated due to market, credit or other events beyond the Funds’ control, which could require the Funds to reduce leverage and dispose of portfolio investments at inopportune times and prices.

(g) When-Issued/Delayed-Delivery Transactions

When-issued or delayed-delivery transactions involve a commitment to purchase or sell securities for a predetermined price or yield, with payment and delivery taking place beyond the customary settlement period. When

36 Semi-Annual Report | November 30, 2013

Table of Contents

Notes to Financial Statements

PIMCO Municipal Income Funds II

November 30, 2013 (unaudited)

1. Organization and Significant Accounting Policies (continued)

delayed-delivery purchases are outstanding, the Funds will set aside and maintain until the settlement date in a designated account, liquid assets in an amount sufficient to meet the purchase price. When purchasing a security on a delayed-delivery basis, the Funds assume the rights and risks of ownership of the security, including the risk of price and yield fluctuations; consequently, such fluctuations are taken into account when determining the NAV. The Funds may dispose of or renegotiate a delayed-delivery transaction after it is entered into, and may sell when-issued securities before they are delivered, which may result in a realized gain or loss. When a security is sold on a delayed-delivery basis, the Funds do not participate in future gains and losses with respect to the security.

(h) U.S. Government Agencies or Government-Sponsored Enterprises

Securities issued by U.S. Government agencies or government-sponsored enterprises may not be guaranteed by the U.S. Treasury. The Government National Mortgage Association (“GNMA” or “Ginnie Mae”), a wholly-owned U.S. Government corporation, is authorized to guarantee, with the full faith and credit of the U.S. Government, the timely payment of principal and interest on securities issued by institutions approved by GNMA and backed by pools of mortgages insured by the Federal Housing Administration or guaranteed by the Department of Veterans Affairs. Government-related guarantors not backed by the full faith and credit of the U.S. Government include the Federal National Mortgage Association (“FNMA” or “Fannie Mae”) and the Federal Home Loan Mortgage Corporation (“FHLMC” or “Freddie Mac”). Pass-through securities issued by FNMA are guaranteed as to timely payment of principal and interest by FNMA, but are not backed by the full faith and credit of the U.S.

Government. FHLMC guarantees the timely payment of interest and ultimate collection of principal, but its participation certificates are not backed by the full faith and credit of the U.S. Government.

(i) Restricted Securities

The Funds are permitted to invest in securities that are subject to legal or contractual restrictions on resale. These securities generally may be resold in transactions exempt from registration or to the public if the securities are registered. Disposal of these securities may involve time-consuming negotiations and expenses, and prompt sale at an acceptable price may be difficult.

(j) Interest Expense

Interest expense primarily relates to the Funds’ participation in Floating Rate Notes held by third parties in conjunction with Inverse Floater transactions.

(k) Custody Credits on Cash Balances

The Funds may benefit from an expense offset arrangement with their custodian bank, whereby uninvested cash balances may earn credits that reduce monthly custodian and accounting agent expenses. Had these cash balances been invested in income-producing securities, they would have generated income for the Funds. Cash overdraft charges, if any, are included in custodian and accounting agent fees.

2. Principal Risks

In the normal course of business, the Funds trade financial instruments and enter into financial transactions where risk of potential loss exists due to, among other things, changes in the market (market risk) or failure of the other party to a transaction to perform (counterparty risk). The Funds are also exposed to other risks such as, but not limited to, interest rate, credit and leverage risks.

November 30, 2013 | Semi-Annual Report 37

Table of Contents

Notes to Financial Statements

PIMCO Municipal Income Funds II

November 30, 2013 (unaudited)

2. Principal Risks (continued)

Interest rate risk is the risk that fixed income securities will decline in value because of changes in interest rates. As nominal interest rates rise, the values of certain fixed income securities held by the Funds are likely to decrease. A nominal interest rate can be described as the sum of a real interest rate and an expected inflation rate. Fixed income securities with longer durations tend to be more sensitive to changes in interest rates, usually making them more volatile than securities with shorter durations. Duration is used primarily as a measure of the sensitivity of a fixed income security’s market price to interest rate ( i.e. yield) movements.

Variable and floating rate securities generally are less sensitive to interest rate changes but may decline in value if their interest rates do not rise as much, or as quickly, as interest rates in general. Conversely, floating rate securities will not generally increase in value if interest rates decline. Inverse floating rate securities may decrease in value if interest rates increase. Inverse floating rate securities may also exhibit greater price volatility than a fixed rate obligation with similar credit quality. When a Fund holds variable or floating rate securities, a decrease (or, in the case of inverse floating rate securities, an increase) in market interest rates will adversely affect the income received from such securities and the NAV of the Funds’ shares.

The Funds are exposed to credit risk, which is the risk of losing money if the issuer or guarantor of a fixed income security is unable or unwilling, or is perceived (whether by market participants, rating agencies, pricing services or otherwise) as unable or unwilling, to make timely principal and/or interest payments, or to otherwise honor its obligations. Securities are subject to varying degrees of credit risk, which are often reflected in credit ratings.

The market values of securities may decline due to general market conditions (market risk) which are not specifically related to a particular company, such as real or perceived adverse economic conditions, changes in the general outlook for corporate earnings, changes in interest or currency rates or adverse investor sentiment. They may also decline due to factors that affect a particular industry or industries, such as labor shortages or increased production costs and competitive conditions within an industry. Equity securities and equity-related investments generally have greater market price volatility than fixed income securities.

The Funds are exposed to counterparty risk, or the risk that an institution or other entity with which the Funds have unsettled or open transactions will default. The potential loss to the Funds could exceed the value of the financial assets recorded in the Funds’ financial statements. Financial assets, which potentially expose the Funds to counterparty risk, consist principally of cash due from counterparties and investments. The Sub-Adviser seeks to minimize the Funds’ counterparty risk by performing reviews of each counterparty and by minimizing concentration of counterparty risk by undertaking transactions with multiple customers and counterparties on recognized and reputable exchanges. Delivery of securities sold is only made once the Funds have received payment. Payment is made on a purchase once the securities have been delivered by the counterparty. The trade will fail if either party fails to meet its obligation.

The Funds are exposed to risks associated with leverage. Leverage may cause the value of the Funds’ shares to be more volatile than if the Funds did not use leverage. This is because leverage tends to exaggerate the effect of any increase or decrease in the value of the Funds’ portfolio securities. The Funds may engage in transactions or purchase instruments that give

38 Semi-Annual Report | November 30, 2013

Table of Contents

Notes to Financial Statements

PIMCO Municipal Income Funds II

November 30, 2013 (unaudited)

2. Principal Risks (continued)

rise to forms of leverage. In addition, to the extent the Funds employ leverage, dividend and interest costs may not be recovered by any appreciation of the securities purchased with the leverage proceeds and could exceed the Funds’ investment returns, resulting in greater losses.

The Funds hold defaulted securities that may involve special considerations including bankruptcy proceedings, other regulatory and legal restrictions affecting the Funds’ ability to trade, and the availability of prices from independent pricing services or dealer quotations. Some of these securities are illiquid and not actively traded. Sale of securities in bankrupt companies at an acceptable price may be difficult and differences compared to the value of the securities used by the Funds could be material. A Fund may incur additional expenses to the extent it is required to seek recovery upon a portfolio security’s default in the payment of principal or interest. In any bankruptcy proceeding relating to a defaulted investment, a Fund may lose its entire investment or may be required to accept cash or securities with a value substantially less than its original investment.

The Funds are party to International Swaps and Derivatives Association, Inc. Master Agreements (“ISDA Master Agreements”) with select counterparties that govern transactions, over-the-counter derivatives and foreign exchange contracts entered into by the Funds and those counterparties. The ISDA Master Agreements contain provisions for general obligations, representations, agreements, collateral and events of default or termination. Events of termination include conditions that may entitle counterparties to elect to terminate early and cause settlement of all outstanding transactions under the applicable ISDA Master Agreement. Any election to terminate early could be material to the financial statements of the Funds.

The considerations and factors surrounding the settlement of certain purchases and sales made on a delayed-delivery basis are governed by Master Securities Forward Transaction Agreements (“Master Forward Agreements”) between the Funds and select counterparties. The Master Forward Agreements maintain provisions for, among other things, initiation and confirmation, payment and transfer, events of default, termination, and maintenance of collateral.

3. Financial Derivative Instruments

Disclosure about derivatives and hedging activities requires qualitative disclosure regarding objectives and strategies for using derivatives, quantitative disclosure about fair value amounts of gains and losses on derivatives, and disclosure about credit-risk-related contingent features in derivative agreements. The disclosure requirements distinguish between derivatives, which are accounted for as “hedges,” and those that do not qualify for such accounting. Although the Funds at times use derivatives for hedging purposes, the Funds reflect derivatives at fair value and recognize changes in fair value through the Funds’ Statements of Operations, and such derivatives do not qualify for hedge accounting treatment.

(a) Swap Agreements

Swap agreements are bilaterally negotiated agreements between the Funds and a counterparty to exchange or swap investment cash flows, assets, foreign currencies or market or event-linked returns at specified, future intervals. Swap agreements may be privately negotiated in the over-the-counter market (“OTC swaps”) or may be executed in a multilateral or other trade facility platform, such as a registered commodities exchange (“centrally cleared swaps”). The Funds may enter into credit default, cross-currency, interest rate, total return, variance and other

November 30, 2013 | Semi-Annual Report 39

Table of Contents

Notes to Financial Statements

PIMCO Municipal Income Funds II

November 30, 2013 (unaudited)

3. Financial Derivative Instruments (continued)

forms of swap agreements in order, among other things, manage their exposure to credit, currency and interest rate risk. In connection with these agreements, securities or cash may be identified as collateral or margin in accordance with the terms of the respective swap agreements to provide assets of value and recourse in the event of default or bankruptcy/insolvency.

OTC swap payments received or made at the beginning of the measurement period, if any, are reflected as such on the Funds’ Statements of Assets and Liabilities and represent payments made or received upon entering into the swap agreement to compensate for differences between the stated terms of the swap agreement and prevailing market conditions (credit spreads, currency exchange rates, interest rates, and other relevant factors). These upfront payments are recorded as realized gains or losses on the Funds’ Statements of Operations upon termination or maturity of the swap. A liquidation payment received or made at the termination of the swap is recorded as realized gain or loss on the Funds’ Statements of Operations. Net periodic payments received or paid by the Funds are included as part of realized gains or losses on the Funds’ Statements of Operations. Changes in market value, if any, are reflected as a component of net changes in unrealized appreciation/depreciation on the Funds’ Statements of Operations. Daily changes in valuation of centrally cleared swaps, if any, are recorded as a receivable or payable, as applicable, for variation margin on centrally cleared swaps on the Funds’ Statements of Assets and Liabilities.

Entering into these agreements involves, to varying degrees, elements of credit, legal, market and documentation risk in excess of the amounts recognized on the Funds’ Statements of Assets and Liabilities. Such risks include the

possibility that there will be no liquid market for these agreements, that the counterparties to the agreements may default on their obligation to perform or disagree as to the meaning of contractual terms in the agreements and that there may be unfavorable changes in interest rates.

Interest Rate Swap Agreements – Interest rate swap agreements involve the exchange by the Funds with a counterparty of their respective commitments to pay or receive interest, e.g., an exchange of floating rate payments for fixed rate payments, with respect to the notional amount of principal. Certain forms of interest rate swap agreements may include: (i) interest rate caps, under which, in return for a premium, one party agrees to make payments to the other to the extent that interest rates exceed a specified rate, or “cap”, (ii) interest rate floors, under which, in return for a premium, one party agrees to make payments to the other to the extent that interest rates fall below a specified rate, or “floor”, (iii) interest rate collars, under which a party sells a cap and purchases a floor or vice versa in an attempt to protect itself against interest rate movements exceeding given minimum or maximum levels, (iv) callable interest rate swaps, under which the counterparty may terminate the swap transaction in whole at zero cost by a predetermined date and time prior to the maturity date, (v) spreadlocks, which allow the interest rate swap users to lock in the forward differential (or spread) between the interest rate swap rate and a specified benchmark, or (vi) basis swaps, under which two parties can exchange variable interest rates based on different money markets.

4. Investment Manager/Sub-Adviser

Each Fund has an Investment Management Agreement (each an “Agreement”) with the Investment Manager. Subject to the supervision of each Fund’s Board, the Investment Manager is responsible for managing, either directly or

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Table of Contents

Notes to Financial Statements

PIMCO Municipal Income Funds II

November 30, 2013 (unaudited)

4. Investment Manager/Sub-Adviser (continued)

through others selected by it, the Funds’ investment activities, business affairs and administrative matters. Pursuant to each Agreement, the Investment Manager receives an annual fee, payable monthly, at an annual rate of 0.65% of each Funds’ average daily net assets, inclusive of net assets attributable to any Preferred Shares that were outstanding.

The Investment Manager has retained the Sub-Adviser to manage the Funds’ investments. Subject to the supervision of the Investment Manager, the Sub-Adviser is responsible for making all of the Funds’ investment decisions. The Investment Manager, not the Funds, pays a portion of the fees it receives as Investment Manager to the Sub-Adviser in return for its services.

5. Investments in Securities

For the six months ended November 30, 2013, purchases and sales of investments, other than short-term securities were:

Municipal II California Municipal II New York Municipal II
Purchases $ 145,189,944 $ 48,669,565 $ 6,468,558
Sales 133,332,236 45,136,467 8,993,709

6. Income Tax Information

At November 30, 2013, the aggregate cost basis and the net unrealized appreciation (depreciation) of investments for federal income tax purposes were:

Federal Tax Cost Basis Unrealized Appreciation Unrealized Depreciation Net Unrealized Appreciation
Municipal II $ 997,265,998 $ 49,182,306 $ 18,593,438 $ 30,588,868
California Municipal II 374,934,203 31,795,678 3,981,099 27,814,579
New York Municipal II 183,210,931 8,561,700 5,787,022 2,774,678

Differences between book and tax cost basis were attributable to Inverse Floaters transactions and/or wash sale loss deferrals.

7. Auction-Rate Preferred Shares

Municipal II has 2,936 shares of Preferred Shares Series A, 2,936 shares of Preferred Shares Series B, 2,936 shares of Preferred Shares Series C, 2,936 shares of Preferred Shares Series D and 2,936 shares of Preferred Shares Series E outstanding, each with a liquidation preference of $25,000 per share plus any accumulated, unpaid dividends.

California Municipal II has 1,304 shares of Preferred Shares Series A, 1,304 shares of Preferred Shares Series B, 1,304 shares of Preferred Shares Series C, 1,304 shares of Preferred Shares Series D and 1,304 shares of

Preferred Shares Series E outstanding, each with a liquidation preference of $25,000 per share plus any accumulated, unpaid dividends.

New York Municipal II has 1,580 shares of Preferred Shares Series A and 1,580 shares of Preferred Shares Series B outstanding, each with a liquidation preference of $25,000 per share plus any accumulated, unpaid dividends.

Dividends are accumulated daily at an annual rate (that is typically re-set every seven days). Distributions of net realized capital gains, if any, are paid annually.

November 30, 2013 | Semi-Annual Report 41

Table of Contents

Notes to Financial Statements

PIMCO Municipal Income Funds II

November 30, 2013 (unaudited)

7. Auction-Rate Preferred Shares (continued)

For the six months ended November 30, 2013, the annualized dividend rates ranged from:

Municipal II:
Series A 0.246% 0.083% 0.122%
Series B 0.246% 0.083% 0.098%
Series C 0.246% 0.083% 0.098%
Series D 0.246% 0.083% 0.098%
Series E 0.246% 0.083% 0.098%
California Municipal II:
Series A 0.246% 0.083% 0.122%
Series B 0.246% 0.083% 0.098%
Series C 0.246% 0.083% 0.098%
Series D 0.246% 0.083% 0.098%
Series E 0.246% 0.083% 0.098%
New York Municipal II:
Series A 0.246% 0.083% 0.098%
Series B 0.246% 0.083% 0.098%

The Funds are subject to certain limitations and restrictions while Preferred Shares are outstanding. Failure to comply with these limitations and restrictions could preclude the Funds from declaring or paying any dividends or distributions to common shareholders or repurchasing common shares and/or could trigger the mandatory redemption of Preferred Shares at their liquidation preference plus any accumulated, unpaid dividends.

Preferred shareholders, who are entitled to one vote per share, generally vote together with the common shareholders but vote separately as a class to elect two Trustees and on certain matters adversely affecting the rights of the Preferred Shares.

Since mid-February 2008, holders of auction-rate preferred shares (“ARPS”) issued by the Funds have been directly impacted by a lack of liquidity, which has similarly affected ARPS

holders in many of the nation’s closed-end funds. Since then, regularly scheduled auctions for ARPS issued by the Funds have consistently “failed” because of insufficient demand (bids to buy shares) to meet the supply (shares offered for sale) at each auction. In a failed auction, ARPS holders cannot sell all, and may not be able to sell any, of their shares tendered for sale. While repeated auction failures have affected the liquidity for ARPS, they do not constitute a default or automatically alter the credit quality of the ARPS, and the ARPS holders have continued to receive dividends at the defined “maximum rate” equal to the higher of the 30-day “AA” Composite Commercial Paper Rate multiplied by 110% or the Taxable Equivalent of the Short-Term Municipal Obligations Rate-defined as 90% of the quotient of (A) the per annum rate expressed on an interest equivalent basis equal to the S&P Municipal Bond 7-day High Grade Rate Index divided by (B) 1.00 minus the Marginal Tax Rate (expressed as a decimal)

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Notes to Financial Statements

PIMCO Municipal Income Funds II

November 30, 2013 (unaudited)

7. Auction-Rate Preferred Shares (continued)

multiplied by 110% (which is a function of short-term interest rates). As of November 30, 2013 the current multiplier for calculating the maximum rate was 110%. If the Funds’ ARPS auctions continue to fail and the “maximum

rate” payable on the ARPS rises as a result of changes in short-term interest rates, returns for the Funds’ common shareholders could be adversely affected.

8. Subsequent Events

In preparing these financial statements, the Funds’ management has evaluated events and transactions for potential recognition or disclosure through the date the financial statements were issued.

On December 2, 2013, the following dividends were declared to common shareholders payable January 2, 2014 to shareholders of record on December 12, 2013.

Municipal II $0.065 per common share
California Municipal II $0.0625 per common share
New York Municipal II $0.06625 per common share

On January 2, 2014, the following dividends were declared to common shareholders payable February 3, 2014 to shareholders of record on January 13, 2014.

Municipal II $0.065 per common share
California Municipal II $0.0625 per common share
New York Municipal II $0.06625 per common share

There were no other subsequent events identified that require recognition or disclosure.

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Table of Contents

Financial Highlights

PIMCO Municipal Income Fund II

For a common share outstanding throughout each period:

2013 2012 2011 2010 2009
Net asset value, beginning of period $12.17 $11.91 $10.12 $10.77 $8.97 $13.86
Investment Operations:
Net investment income 0.39 0.82 0.88 0.91 0.88 1.02
Net realized and change in unrealized gain (loss) (1.25 ) 0.23 1.70 (0.75 ) 1.73 (4.94 )
Total from investment operations (0.86 ) 1.05 2.58 0.16 2.61 (3.92 )
Dividends on Preferred Shares from Net Investment Income – † (0.01 ) (0.01 ) (0.03 ) (0.03 ) (0.19 )
Net increase (decrease) in net assets applicable to common shareholders resulting from investment operations (0.86 ) 1.04 2.57 0.13 2.58 (4.11 )
Dividends to Common Shareholders from Net Investment Income (0.39 ) (0.78 ) (0.78 ) (0.78 ) (0.78 ) (0.78 )
Net asset value, end of period $10.92 $12.17 $11.91 $10.12 $10.77 $8.97
Market price, end of period $10.56 $12.19 $12.54 $10.45 $11.12 $9.56
Total Investment Return (1) (10.22 )% 3.41 % 28.70 % 1.30 % 25.49 % (26.46 )%
RATIOS/SUPPLEMENTAL DATA:
Net assets, applicable to common shareholders, end of period (000s) $666,698 $741,368 $722,161 $610,800 $645,589 $534,046
Ratio of expenses to average net assets, including interest expense (2)(4) 1.23 % (6) 1.16 % (3)(5) 1.19 % (3)(5) 1.37 % (3) 1.38 % (3)(5) 1.73 % (3)(5)
Ratio of expenses to average net assets, excluding interest expense (2) 1.18 % (6) 1.11 % (3)(5) 1.11 % (3)(5) 1.24 % (3) 1.24 % (3)(5) 1.35 % (3)(5)
Ratio of net investment income to average net assets (2) 7.21 % (6) 6.74 % (5) 8.04 % (5) 8.80 % 8.77 % (5) 10.23 % (5)
Preferred shares asset coverage per share $70,415 $75,501 $74,192 $66,606 $68,974 $61,376
Portfolio turnover rate 13 % 16 % 26 % 21 % 6 % 42 %

† Less than $(0.005) per common share.

(1) Total investment return is calculated assuming a purchase of a common share at the market price on the first day and a sale of a common share at the market price on the last day of each period reported. Dividends and distributions, if any, are assumed, for purposes of this calculation, to be reinvested at prices obtained under the Fund’s dividend reinvestment plan. Total investment return does not reflect brokerage commissions or sales charges in connection with the purchase or sale of Fund shares. Total investment return for a period of less than one year is not annualized.

(2) Calculated on the basis of income and expenses applicable to both common and preferred shares relative to the average net assets of common shareholders.

(3) Inclusive of expenses offset by custody credits earned on cash balances at the custodian bank (See note 1(k) in Notes to Financial Statements).

(4) Interest expense relates to the liability for Floating Rate Notes issued in connection with Inverse Floater transactions and/or participation in reverse repurchase agreement transactions.

(5) During the periods indicated above, the Investment Manager waived a portion of its investment management fee. The effect of such waiver relative to the average net assets of common shareholders was 0.006%, 0.07%, 0.004% and 0.10% for the years ended May 31, 2013, May 31, 2012, May 31, 2010 and May 31, 2009, respectively.

(6) Annualized.

44 Semi-Annual Report | November 30, 2013 | See accompanying Notes to Financial Statements

Table of Contents

Financial Highlights

PIMCO California Municipal Income Fund II

For a common share outstanding throughout each period:

2013 2012 2011 2010 2009
Net asset value, beginning of period $8.93 $8.65 $7.38 $8.11 $7.48 $13.34
Investment Operations:
Net investment income 0.34 0.69 0.71 0.74 0.76 0.85
Net realized and change in unrealized gain (loss) (1.16 ) 0.35 1.32 (0.70 ) 0.67 (5.69 )
Total from investment operations (0.82 ) 1.04 2.03 0.04 1.43 (4.84 )
Dividends on Preferred Shares from Net Investment Income – † (0.01 ) (0.01 ) (0.02 ) (0.03 ) (0.18 )
Net increase (decrease) in net assets applicable to common shareholders resulting from investment operations (0.82 ) 1.03 2.02 0.02 1.40 (5.02 )
Dividends and Distributions to Common Shareholders from:
Net investment income (0.38 ) (0.68 ) (0.70 ) (0.75 ) (0.77 ) (0.80 )
Return of capital – (0.07 ) (0.05 ) – – (0.04 )
Total dividends and distributions to shareholders (0.38 ) (0.75 ) (0.75 ) (0.75 ) (0.77 ) (0.84 )
Net asset value, end of period $7.73 $8.93 $8.65 $7.38 $8.11 $7.48
Market price, end of period $9.15 $10.51 $10.15 $9.21 $9.33 $8.78
Total Investment Return (1) (9.22 )% 11.41 % 19.59 % 7.53 % 16.44 % (32.26 )%
RATIOS/SUPPLEMENTAL DATA:
Net assets, applicable to common shareholders, end of period (000s) $244,807 $282,181 $272,570 $231,486 $252,816 $231,415
Ratio of expenses to average net assets, including interest expense (2)(4) 1.40 % (6) 1.34 % (3)(5) 1.44 % (3)(5) 1.55 % (3) 1.56 % (3)(5) 3.15 % (3)(5)
Ratio of expenses to average net assets, excluding interest expense (2) 1.32 % (6) 1.23 % (3)(5) 1.24 % (3)(5) 1.37 % (3) 1.33 % (3)(5) 1.43 % (3)(5)
Ratio of net investment income to average net assets (2) 8.59 % (6) 7.65 % (5) 8.99 % (5) 9.73 % 9.78 % (5) 9.31 % (5)
Preferred shares asset coverage per share $62,547 $68,279 $66,804 $60,503 $63,773 $60,490
Portfolio turnover rate 10 % 13 % 25 % 15 % 9 % 62 %

† Less than $(0.005) per common share.

(1) Total investment return is calculated assuming a purchase of a common share at the market price on the first day and a sale of a common share at the market price on the last day of each period reported. Dividends and distributions, if any, are assumed, for purposes of this calculation, to be reinvested at prices obtained under the Fund’s dividend reinvestment plan. Total investment return does not reflect brokerage commissions or sales charges in connection with the purchase or sale of Fund shares. Total investment return for a period of less than one year is not annualized.

(2) Calculated on the basis of income and expenses applicable to both common and preferred shares relative to the average net assets of common shareholders.

(3) Inclusive of expenses offset by custody credits earned on cash balances at the custodian bank (See note 1(k) in Notes to Financial Statements).

(4) Interest expense relates to the liability for Floating Rate Notes issued in connection with Inverse Floater transactions and/or participation in reverse repurchase agreement transactions.

(5) During the periods indicated above, the Investment Manager waived a portion of its investment management fee. The effect of such waiver relative to the average net assets of common shareholders was 0.006%, 0.08%, 0.004% and 0.10% for the years ended May 31, 2013, May 31, 2012, May 31, 2010 and May 31, 2009, respectively.

(6) Annualized.

See accompanying Notes to Financial Statements | November 30, 2013 | Semi-Annual Report 45

Table of Contents

Financial Highlights

PIMCO New York Municipal Income Fund II

For a common share outstanding throughout each period:

2013 2012 2011 2010 2009
Net asset value, beginning of period $11.32 $11.37 $10.10 $10.90 $9.56 $13.67
Investment Operations:
Net investment income 0.37 0.79 0.85 0.88 0.98 1.00
Net realized and change in unrealized gain (loss) (1.28 ) (0.02 ) 1.24 (0.85 ) 1.19 (4.13 )
Total from investment operations (0.91 ) 0.77 2.09 0.03 2.17 (3.13 )
Dividends on Preferred Shares from Net Investment Income – † (0.02 ) (0.02 ) (0.03 ) (0.03 ) (0.19 )
Net increase (decrease) in net assets applicable to common shareholders resulting from investment operations (0.91 ) 0.75 2.07 0.00 2.14 (3.32 )
Dividends to Common Shareholders from Net Investment Income (0.40 ) (0.80 ) (0.80 ) (0.80 ) (0.80 ) (0.79 )
Net asset value, end of period $10.01 $11.32 $11.37 $10.10 $10.90 $9.56
Market price, end of period $10.41 $12.01 $12.29 $10.92 $11.42 $10.26
Total Investment Return (1) (9.93 )% 4.14 % 20.97 % 3.03 % 19.92 % (22.95 )%
RATIOS/SUPPLEMENTAL DATA:
Net assets, applicable to common shareholders, end of period (000s) $109,677 $123,685 $123,667 $109,256 $117,161 $102,126
Ratio of expenses to average net assets, including interest expense (2)(4) 1.52 % (6) 1.42 % (3)(5) 1.45 % (3)(5) 1.55 % (3) 1.53 % (3)(5) 1.88 % (3)(5)
Ratio of expenses to average net assets, excluding interest expense (2) 1.45 % (6) 1.33 % (3)(5) 1.36 % (3)(5) 1.44 % (3) 1.43 % (3)(5) 1.51 % (3)(5)
Ratio of net investment income to average net assets (2) 7.38 % (6) 6.78 % (5) 7.86 % (5) 8.46 % 9.51 % (5) 9.63 % (5)
Preferred shares asset coverage per share $59,708 $64,140 $64,135 $59,574 $62,073 $57,316
Portfolio turnover rate 3 % 25 % 18 % 7 % 5 % 33 %

† Less than $(0.005) per common share.

(1) Total investment return is calculated assuming a purchase of a common share at the market price on the first day and a sale of a common share at the market price on the last day of each period reported. Dividends and distributions, if any, are assumed, for purposes of this calculation, to be reinvested at prices obtained under the Fund’s dividend reinvestment plan. Total investment return does not reflect brokerage commissions or sales charges in connection with the purchase or sale of Fund shares. Total investment return for a period of less than one year is not annualized.

(2) Calculated on the basis of income and expenses applicable to both common and preferred shares relative to the average net assets of common shareholders.

(3) Inclusive of expenses offset by custody credits earned on cash balances at the custodian bank (See note 1(k) in Notes to Financial Statements).

(4) Interest expense relates to the liability for Floating Rate Notes issued in connection with Inverse Floater transactions and/or participation in reverse repurchase agreement transactions.

(5) During the periods indicated above, the Investment Manager waived a portion of its investment management fee. The effect of such waiver relative to the average net assets of common shareholders was 0.006%, 0.08%, 0.004% and 0.10% for the years ended May 31, 2013, May 31, 2012, May 31, 2010 and May 31, 2009, respectively.

(6) Annualized.

46 Semi-Annual Report | November 30, 2013| See accompanying Notes to Financial Statements

Table of Contents

Annual Shareholder Meeting Results/Proxy Voting Policies & Procedures

PIMCO Municipal Income Funds II (unaudited)

Annual Shareholder Meeting Results:

The Funds held their annual meeting of shareholder on December 18, 2013. Common/Preferred shareholders voted as indicated below:

Municipal II
Re-election of Deborah A. DeCotis — Class II to serve until 2016-2017 fiscal year 51,489,961 4,273,544
Re-election of James A. Jacobson* — Class II to serve until 2016-2017 fiscal year 11,484 354
California Municipal II
Re-election of Deborah A. DeCotis — Class II to serve until 2016-2017 fiscal year 25,105,447 1,809,442
Re-election of James A. Jacobson* — Class II to serve until 2016-2017 fiscal year 3,971 274
New York Municipal II
Re-election of Deborah A. DeCotis — Class II to serve until 2016-2017 fiscal year 9,324,548 562,894
Re-election of James A. Jacobson* — Class II to serve until 2016-2017 fiscal year 2,445 58

The other members of the Board of Trustees at the time of the meeting, namely, Messrs. Bradford K. Gallagher, Hans W. Kertess*, William B. Ogden, IV, John C. Maney†, and Alan Rappaport continued to serve as Trustees of the Funds.

  • Preferred Shares Trustee

† Interested Trustee

Proxy Voting Policies & Procedures:

A description of the policies and procedures that the Funds adopted to determine how to vote proxies relating to portfolio securities and information about how the Funds voted proxies relating to portfolio securities held during the most recent twelve month period ended

June 30 is available (i) without charge, upon request, by calling the Funds’ shareholder servicing agent at (800) 254-5197; (ii) on the Funds’ website at us.allianzgi.com/closedendfunds; and (iii) on the Securities and Exchange Commission website at www.sec.gov.

November 30, 2013 | Semi-Annual Report 47

Table of Contents

Matters Relating to the Trustees’ Consideration of the Investment Management & Portfolio Management Agreements

PIMCO Municipal Income Funds II (unaudited)

The Investment Company Act of 1940, as amended, requires that both the full Board of Trustees (the “Trustees”) and a majority of the non-interested Trustees (the “Independent Trustees”), voting separately, approve each Fund’s Management Agreement with the Investment Manager (the “Advisory Agreements”) and Portfolio Management Agreement between the Investment Manager and the Sub-Adviser (the “Sub-Advisory Agreements,” and, together with the Advisory Agreements, the “Agreements”). The Trustees met telephonically on June 10, 2013 and in person on June 25, 2013 (the “contract review meetings”) for the specific purpose of considering whether to approve the continuation of the Advisory Agreements and the Sub-Advisory Agreements. The Independent Trustees were assisted in their evaluation of the Agreements by independent legal counsel, from whom they received separate legal advice and with whom they met separately from Fund management during the contract review meetings.

In connection with their deliberations regarding the continuation of the Agreements, the Trustees, including the Independent Trustees, considered such information and factors as they believed, in light of the legal advice furnished to them and their own business judgment, to be relevant. As described below, the Trustees considered the nature, quality, and extent of the various investment management, administrative and other services performed by the Investment Manager or the Sub-Adviser under the applicable Agreement.

In connection with their contract review meetings, the Trustees received and relied upon materials provided by the Investment Manager which included, among other items: (i) information provided by Lipper Inc. (“Lipper”), an independent third party, on the total return investment performance (based on net assets) of the Funds for various time

periods, the investment performance of a group of funds with investment classifications/objectives comparable to those of the Funds identified by Lipper (the “Lipper performance universe”) and the performance of an applicable benchmark index, (ii) information provided by Lipper on the Funds’ management fees and other expenses and the management fees and other expenses of comparable funds identified by Lipper, (iii) information regarding the investment performance and fees for open-end funds managed by the Sub-Adviser with similar investment objectives and policies to those of the Funds, (iv) the estimated profitability to the Investment Manager from its relationship with the Funds for the one year period ended December 31, 2012, (v) descriptions of various functions performed by the Investment Manager and the Sub-Adviser for the Funds, such as portfolio management, compliance monitoring and portfolio trading practices, and (vi) information regarding the overall organization of the Investment Manager and the Sub-Adviser, including information regarding senior management, portfolio managers and other personnel providing investment management, administrative and other services to the Funds.

The Trustees’ conclusions as to the continuation of the Agreements were based on a comprehensive consideration of all information provided to the Trustees and were not the result of any single factor. Some of the factors that figured particularly in the Trustees’ deliberations are described below, although individual Trustees may have evaluated the information presented differently from one another, attributing different weights to various factors. The Trustees recognized that the fee arrangements for the Funds are the result of review and discussion in prior years between the Independent Trustees and the Investment Manager, that certain aspects of such arrangements may receive greater scrutiny in some years than in others, and that the

48 Semi-Annual Report | November 30, 2013

Table of Contents

Matters Relating to the Trustees’ Consideration of the Investment Management & Portfolio Management Agreements

PIMCO Municipal Income Funds II (unaudited)

Trustees’ conclusions may be based, in part, on their consideration of these same arrangements during the course of the year and in prior years.

Fund-specific performance results reviewed by the Trustees are discussed below. The comparative performance information was prepared and provided by Lipper and was not independently verified by the Trustees. Due to the passage of time, these performance results may differ from the performance results for more recent periods, including those shown elsewhere in this report. The Trustees reviewed, among other information, comparative information showing performance of each Fund against its Lipper performance universe for the one-year, three-year, five-year and ten-year periods ended March 31, 2013.

In addition, it was noted that the Trustees considered matters bearing on the Funds and their advisory arrangements at their meetings throughout the year, including a review of performance data at each regular meeting.

As part of their review, the Trustees examined the Investment Manager’s and the Sub-Adviser’s abilities to provide high quality investment management and other services to the Funds. Among other information, the Trustees considered the investment philosophy and research and decision-making processes of the Sub-Adviser; the experience of key advisory personnel of the Sub-Adviser responsible for portfolio management of the Funds; the ability of the Investment Manager and the Sub-Adviser to attract and retain capable personnel; and the capability of the senior management and staff of the Investment Manager and the Sub-Adviser. In addition, the Trustees reviewed the quality of the Investment Manager’s and the Sub-Adviser’s services with respect to regulatory compliance and compliance with the investment policies of the Funds; the nature and quality of certain administrative services

the Investment Manager is responsible for providing to the Funds; and conditions that might affect the Investment Manager’s or the Sub-Adviser’s ability to provide high quality services to the Funds in the future under the Agreements, including each organization’s respective financial condition and operational stability. Based on the foregoing, the Trustees concluded that the Sub-Adviser’s investment process, research capabilities and philosophy were well suited to each Fund given its investment objective and policies, and that the Investment Manager and the Sub-Adviser would be able to continue to meet any reasonably foreseeable obligations under the Agreements.

In assessing the reasonableness of each Fund’s fees under the Agreements, the Trustees considered, among other information, each Fund’s management fee and its total expense ratio as a percentage of average net assets attributable to common shares and as a percentage of total managed assets (including assets attributable to common shares and preferred shares outstanding combined), and the management fee and total expense ratios of a peer expense group of funds based on information provided by Lipper. The Fund-specific fee and expense results discussed below were prepared and provided by Lipper and were not independently verified by the Trustees.

The Trustees specifically took note of how each Fund compared to its Lipper peers as to performance, management fee expense and total net expenses. The Trustees noted that while the Funds are not charged separate administration fees (recognizing that their management fees include a component for administrative services), it was not clear in all cases whether the peer funds in the Lipper category were separately charged such a fee by their investment managers, so that the total expense ratio (rather than any individual

November 30, 2013 | Semi-Annual Report 49

Table of Contents

Matters Relating to the Trustees’ Consideration of the Investment Management & Portfolio Management Agreements

PIMCO Municipal Income Funds II (unaudited)

expense component) represented the most relevant comparison. It was noted that the total expense ratio comparisons reflect the effect of expense waivers/reimbursements.

Municipal II

The Trustees noted that the expense group for the Fund provided by Lipper consisted of a total of eleven closed-end funds, including the Fund and two other peer Funds in the Allianz fund complex. The trustees noted that only leveraged closed-end funds were considered for inclusion in the group. The Trustees also noted that average net assets of the common shares of the eleven funds in the expense group ranged from $277.2 million to $664.6 million, and that no other fund was larger in asset size than the Fund. The Trustees also noted that the Fund was ranked sixth out of eleven funds in the expense group for total expense ratio based on common share assets, third out of eleven funds in the expense group for total expense ratio based on common share and leveraged assets combined, seventh out of eleven funds in actual management fees based on common share assets and in actual management fees based on common share and sixth out of eleven funds leveraged assets combined (with funds ranked first having the lowest fees/expenses and ranked eleventh having the highest fees/expenses in the expense group).

With respect to Fund total return performance relative to its Lipper performance universe (based on net asset value), the Trustees noted that the Fund had first quintile performance for the one-year and three-year periods and fifth quintile performance for the five-year and ten-year periods ended March 31, 2013.

California Municipal II

The Trustees noted that the expense group for the Fund provided by Lipper consisted of a total of nine closed-end funds, including the Fund and two other peer Funds in the Allianz fund complex. The trustees noted that only

leveraged closed-end funds were considered for inclusion in the group. The Trustees also noted that average net assets of the common shares of the nine funds in the expense group ranged from $33.1 million to $335.7 million, and that two of the funds are larger in asset size than the Fund. The Trustees also noted that the Fund was ranked fifth out of nine funds in the expense group for total expense ratio based on common share assets, fourth out of nine funds in the expense group for total expense ratio based on common share and leveraged assets combined, sixth out of nine funds in actual management fees based on common share assets and fourth out of nine funds in actual management fees based on common share and leveraged assets combined (with funds ranked first having the lowest fees/expenses and ranked ninth having the highest fees/expenses in the expense group).

With respect to Fund total return performance relative to its Lipper performance universe (based on net asset value), the Trustees noted that the Fund had first quintile performance for the one-year and three-year periods and fifth quintile performance for the five-year and ten-year periods ended March 31, 2013.

New York Municipal II

The Trustees noted that the expense group for the Fund provided by Lipper consisted of a total of eight closed-end funds, including the Fund and two other peer Funds in the Allianz fund complex. The Trustees noted that only leveraged closed-end funds were considered for inclusion in the group. The Trustees also noted that average net assets of the common shares of the eight funds in the expense group ranged from $51.7 million to $219.0 million, and that two of the funds are larger in asset size than the Fund. The Trustees also noted that the Fund was ranked third out of eight funds in the expense group for total expense ratio based on common share assets, second out of eight funds in the expense group for total expense

50 Semi-Annual Report | November 30, 2013

Table of Contents

Matters Relating to the Trustees’ Consideration of the Investment Management & Portfolio Management Agreements

PIMCO Municipal Income Funds II (unaudited)

ratio based on common share and leveraged assets combined, seventh out of eight funds in actual management fees based on common share assets and third out of eight funds in actual management fees based on common share and leveraged assets combined (with funds ranked first having the lowest fees/expenses and ranked eighth having the highest fees/expenses in the expense group).

With respect to Fund total return performance relative to its Lipper performance universe (based on net asset value), the Trustees noted that the Fund had first quintile performance for the one-year and three-year periods and fifth quintile performance for the five-year and ten-year periods ended March 31, 2013.

In addition to their review of Fund performance based on net asset value, the Trustees also considered the market value performance of each Fund’s common shares and related share price premium and/or discount information based on the materials provided by Lipper and management.

The Trustees also considered the management fees charged by the Sub-Adviser to open-end funds with similar investment objectives and strategies to those of the Funds. The Trustees noted that the management fees paid by the Funds are higher than the fees paid by the open-end funds offered for comparison but were advised by the Sub-Adviser that there are additional portfolio management challenges in managing the Funds, such as those associated with the use of leverage and attempting to meet a regular dividend. The Trustees were advised that the Sub-Adviser does not manage any institutional or separate accounts with investment strategies and return profiles similar to those of the Funds.

The Trustees also took into account that the Funds have preferred shares outstanding, which increases the amount of fees received by

the Investment Manager and the Sub-Adviser under the Agreements (because the fees are calculated based on each Fund’s net assets, including any assets attributable to preferred shares). In this regard, the Trustees took into account that the Investment Manager and the Sub-Adviser have a financial incentive for the Funds to continue to have preferred shares outstanding, which may create a conflict of interest between the Investment Manager and the Sub-Adviser, on the one hand, and the Funds’ common shareholders, on the other. In this regard, the Trustees considered information provided by the Investment Manager and the Sub-Adviser and related presentations as to why each Fund’s use of preferred shares continues to be appropriate and in the best interests of the respective Fund’s common shareholders under current market conditions.

Based on a profitability analysis provided by the Investment Manager, the Trustees also considered the estimated profitability to the Investment Manager from its relationship with each Fund and determined that such profitability did not appear to be excessive.

The Trustees also took into account that, as closed-end investment companies, the Funds do not currently intend to raise additional assets, so the assets of the Funds will grow (if at all) only through the investment performance of each Fund. Therefore, the Trustees did not consider potential economies of scale as a principal factor in assessing the fee rates payable under the Agreements.

Additionally, the Trustees considered so-called “fall-out benefits” to the Investment Manager and the Sub-Adviser, such as reputational value derived from serving as Investment Manager and Sub-Adviser to the Funds.

After reviewing these and other factors described herein, the Trustees concluded, with

November 30, 2013 | Semi-Annual Report 51

Table of Contents

Matters Relating to the Trustees’ Consideration of the Investment Management & Portfolio Management Agreements

PIMCO Municipal Income Funds II (unaudited)

respect to each Fund, within the context of their overall conclusions regarding the Agreements and based on the information provided and related representations made by management, that they were satisfied with the Investment Manager’s and the Sub-Adviser’s responses and efforts relating to the investment performance of the Fund. The Trustees also concluded that the fees payable under each Agreement represent reasonable compensation in light of

the nature, extent and quality of services provided by the Investment Manager or Sub-Adviser, as the case may be. Based on their evaluation of factors that they deemed to be material, including those factors described above, the Trustees, including the Independent Trustees, unanimously concluded that the continuation of the Agreements was in the interests of each Fund and its shareholders, and should be approved.

52 Semi-Annual Report | November 30, 2013

Table of Contents

Trustees

Hans W. Kertess

Chairman of the Board of Trustees

Deborah A. DeCotis

Bradford K. Gallagher

James A. Jacobson

John C. Maney

William B. Ogden, IV

Alan Rappaport

Fund Officers

Brian S. Shlissel

President & Chief Executive Officer

Lawrence G. Altadonna

Treasurer, Principal Financial & Accounting Officer

Thomas J. Fuccillo

Vice President, Secretary & Chief Legal Officer

Scott Whisten

Assistant Treasurer

Richard J. Cochran

Assistant Treasurer

Orhan Dzemaili

Assistant Treasurer

Thomas L. Harter

Chief Compliance Officer

Lagan Srivastava

Assistant Secretary

Investment Manager

Allianz Global Investors Fund Management LLC

1633 Broadway

New York, NY 10019

Sub-Adviser

Pacific Investment Management Company LLC

840 Newport Center Drive

Newport Beach, CA 92660

Custodian & Accounting Agent

State Street Bank & Trust Co.

225 Franklin Street

Boston, MA 02110

Transfer Agent, Dividend Paying Agent and Registrar

American Stock Transfer & Trust Company, LLC

6201 15th Avenue

Brooklyn, NY 11219

Independent Registered Public Accounting Firm

PricewaterhouseCoopers LLP

300 Madison Avenue

New York, NY 10017

Legal Counsel

Ropes & Gray LLP

Prudential Tower

800 Boylston Street

Boston, MA 02199

This report, including the financial information herein, is transmitted to the shareholders of PIMCO Municipal Income Fund II, PIMCO California Municipal Income Fund II and PIMCO New York Municipal Income Fund II for their information. It is not a prospectus, circular or representation intended for use in the purchase of shares of the Funds or any securities mentioned in this report.

The financial information included herein is taken from the records of the Funds without examination by an independent registered public accounting firm, who did not express an opinion herein.

Notice is hereby given in accordance with Section 23(c) of the Investment Company Act of 1940, as amended, that from time to time the Funds may purchase their common shares in the open market.

The Funds file their complete schedule of portfolio holdings with the Securities and Exchange Commission (“SEC”) for the first and third quarters of their fiscal year on Form N-Q. Each Fund’s Form N-Q is available on the SEC’s website at www.sec.gov and may be reviewed and copied at the SEC’s Public Reference Room in Washington, D.C. Information on the operation of the Public Reference Room may be obtained by calling (800) SEC-0330. The information on Form N-Q is also available on the Funds’ website at us.allianzgi.com/closedendfunds.

Information on the Funds is available at us.allianzgi.com/closedendfunds or by calling the Funds’ shareholder servicing agent at (800) 254-5197.

Table of Contents

us.allianzgi.com

Receive this report electronically and eliminate paper mailings.

To enroll, go to us.allianzgi.com/edelivery.

AZ611SAR_113013

AGI-2013-12-04-8328

Table of Contents

ITEM 2. CODE OF ETHICS

Not required in this filing.

ITEM 3. AUDIT COMMITTEE FINANCIAL EXPERT

Not required in this filing.

ITEM 4. PRINCIPAL ACCOUNTANT FEES AND SERVICES

Not required in this filing

ITEM 5. AUDIT COMMITTEE OF LISTED REGISTRANT

Not required in this filing

ITEM 6. SCHEDULE OF INVESTMENTS

(a) The registrant’s Schedule of Investments is included as part of the report to shareholders filed under Item 1 of this form.
(b) Not applicable.

ITEM 7. DISCLOSURE OF PROXY VOTING POLICIES AND PROCEDURES FOR CLOSED-END MANAGEMENT INVESTMENT COMPANIES

Not required in this filing

ITEM 8. PORTFOLIO MANAGERS OF CLOSED-END MANAGEMENT INVESTMENT COMPANIES

Not required in this filing

ITEM 9. PURCHASES OF EQUITY SECURITIES BY CLOSED-END MANAGEMENT INVESTMENT COMPANY AND AFFILIATED COMPANIES

None

ITEM 10. SUBMISSION OF MATTERS TO A VOTE OF SECURITY HOLDERS

There have been no material changes to the procedures by which shareholders may recommend nominees to the Fund’s Board of Trustees since the Fund last provided disclosure in response to this item.

ITEM 11. CONTROLS AND PROCEDURES

(a) The registrant’s President and Treasurer, Principal Financial & Accounting Officer have concluded that the registrant’s disclosure controls and procedures (as defined in Rule 30a-3(c) under the Act (17 CFR 270.30a-3(c))) are effective based on their evaluation of these controls and procedures as of a date within 90 days of the filing date of this document.

(b) There were no significant changes in the registrant’s internal control over financial reporting (as defined in Rule 30a-3(d) under the Act (17 CFR 270.30a-3(d))) that occurred during the second fiscal quarter of the period covered by this report that has materially affected, or is reasonably likely to materially affect, the registrant’s internal control over financial reporting.

ITEM 12. EXHIBITS

(a) (1) Not required in this filing.

(a) (2) Exhibit 99.302 Cert. — Certification pursuant to Section 302 of the Sarbanes-Oxley Act of 2002

(a) (3) Not applicable

(b) Exhibit 99.906 Cert. — Certification pursuant to Section 906 of the Sarbanes-Oxley Act of 2002

Table of Contents

Signatures

Pursuant to the requirements of the Securities Exchange Act of 1934 and the Investment Company Act of 1940, the registrant has duly caused this report to be signed on its behalf by the undersigned, thereunto duly authorized.

(Registrant) PIMCO New York Municipal Income Fund II

By
Brian S. Shlissel
President & Chief Executive Officer

Date: January 29, 2014

By
Lawrence G. Altadonna
Treasurer, Principal Financial & Accounting Officer

Date: January 29, 2014

Pursuant to the requirements of the Securities Exchange Act of 1934 and the Investment Company Act of 1940, this report has been signed below by the following persons on behalf of the registrant and in the capacities and on the dates indicated.

By
Brian S. Shlissel
President and Chief Executive Officer

Date: January 29, 2014

By
Lawrence G. Altadonna
Treasurer, Principal Financial & Accounting Officer

Date: January 29, 2014

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